Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0246 ATGCCTAAAGCGAATAAGAGCGCCTCCACAGTTGATGATAACCGGTTGAAGCGCAAGGGCGCTGGGGTTGGAAGGAAGCGTTCGAGAAAAGCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGACTTCAGAGAGCAGTATAAGAAGGACCATCCAGACAATAAATCAGTCACTGTTGTGGGTAAAGCTGGCGGTAATGAATGGAAAGCCATGTCTGAGGCTGAAAAAGCTCCATACGTTGCCAAGGCAGAGAAGAAGAAAGCGGAATATGAGAAAACTATTAAAGCGTACAATATGAGATTGGCTGCGGGCAAAAATCCTTCAGAGGAAGCAGAGTCTGATAAATCAAAGTCAGAAGTCAATGACGATGATAATGATGATGACGAAGAGGAGGAAGAGGCGAGGATTACAGTAACAGTGCTGCTGATCAGGAGAGAGAATACAGCCCTGCTGCTTGTCGGAGACGTTTTGGCAGTACACCGCTGCGTTGCAATTAACGATGGCATGAGAATGGCCAAAATTTCAATCAGCAATACCAATTATACTTACGTGCATGACCAGAATGATCCTTCGGAAGCAATTGACGTACACCTTATAATGGTGAAAAGGAGTGGCGCAAAAGCTCCCTTTGTTTACATCTCAGCACTTGTTCTACTAGCATCTGCCTTCTATCTCTACGCGTATGAGGGGAAGTCAATTACCCTTGTCTATTACAGCTTGCTTTTCAACTTAATATTTGTTAAGATCTTACTTTGGAGGCCTGTTGCGAAAGAGTCTGTGGTGATAATGCCGTCTTTTGGAGTACAGCTAGAGACTCACTACATGAGTGGAAAAGTCACCCGCCACTTTGTTCCCATTGACAAGATTCTGAAACCTGTTTTACTAGAATGTGTGACACCAATGACATGTTACTGGAATCTATCTTTGATTGTTCGCGGGGAATCTGAACTAATGTTGATTTTTAAGAACTTGCGTCCACCAGTGAAAATGTTGGTCCATGTCTGGAAGGCCTTGTGTGCTGGAACTGATAGCAAAAGAGGCTTGGACAAAGGCACAGTCGAGAACTAA 1095 0.4429 MPKANKSASTVDDNRLKRKGAGVGRKRSRKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPDNKSVTVVGKAGGNEWKAMSEAEKAPYVAKAEKKKAEYEKTIKAYNMRLAAGKNPSEEAESDKSKSEVNDDDNDDDEEEEEARITVTVLLIRRENTALLLVGDVLAVHRCVAINDGMRMAKISISNTNYTYVHDQNDPSEAIDVHLIMVKRSGAKAPFVYISALVLLASAFYLYAYEGKSITLVYYSLLFNLIFVKILLWRPVAKESVVIMPSFGVQLETHYMSGKVTRHFVPIDKILKPVLLECVTPMTCYWNLSLIVRGESELMLIFKNLRPPVKMLVHVWKALCAGTDSKRGLDKGTVEN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0246 364 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H 180 354 IPR044215 GO:0000506|GO:0006506
Lele55g0246 364 CDD HMGB-UBF_HMG-box 38 104 - -
Lele55g0246 364 MobiDBLite consensus disorder prediction 1 44 - -
Lele55g0246 364 Gene3D High mobility group box domain 23 129 IPR036910 -
Lele55g0246 364 MobiDBLite consensus disorder prediction 20 34 - -
Lele55g0246 364 Pfam GPI-GlcNAc transferase complex, PIG-H component 268 331 IPR019328 -
Lele55g0246 364 SUPERFAMILY HMG-box 25 109 IPR036910 -
Lele55g0246 364 SMART hmgende2 37 108 IPR009071 -
Lele55g0246 364 Coils Coil 89 109 - -
Lele55g0246 364 MobiDBLite consensus disorder prediction 110 141 - -
Lele55g0246 364 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Lele55g0246 364 Pfam HMG (high mobility group) box 38 107 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0246 Lele-ChrLele55 1503020 1507771 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele55g0246 HMG_box 4.4e-22 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g0246 55 1503020 1507771 Lele55g0246 55 1503020 1507771 ECH
Lele55g0246 55 1503020 1507771 Lele56g0233 56 1874633 1879345 ECH
Lele53g1240 53 21040565 21046278 Lele55g0246 55 1503020 1507771 hybridization
Lele54g1212 54 17664763 17669620 Lele55g0246 55 1503020 1507771 hybridization