Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0242 ATGTATAAATTCAAACAGCACCCAATTTCAAATTATCCAAATACTCCCATTGACTTTCCAATCACCCTGAAGAAGAAGAAAACCCCACTCTCTATTTTCTCCCACTCAAGCCTCCCATTTTCTTCCTCTCTTCCTCAGCTTCTTCTTCCTCTTCCTCTTCCTCTTATCCTCCAATTTATGCTAATTTTGTTGACTCAGTTAATATGGGTATCTGCTTCGCTTCTCTCGCTCCCCGTGGTCTCAAGATTAGCGCCAAAAGGTCTCATAATTCAGGATCAGCGAGTCCTTTTTGGGGATTTGAAAGCAGCCACCAAGAACTTTAAATTGGATTCATTGCTTGGAGAGGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTAGATGAGAAGACGCTTTCGCCTGCCAAAGCTGGCTCTGGAATGATGGTCGCTATAAAAAAACTCAACCCTGAGAGTATGCAAGGCTTTCAAGAGTGGCAGTCAGAAGTGAACTTCTTAGGAAGCCTTTCTCACCCAAACTTGGTCAAGCTATTTGGTTACTGCTGGGAGGATGATGAACTTCTCCTCGTCTATGAGTTCATGCCTAAGGGAAGCTTGGAGAGTCATCTCTTCAGAAGGGTTTCTAACTTGGAGCCACTTTCTTGGAACACACGACTCAAAATAGTTATTGATGCAGCTCAAGGCCTAGCTTTCTTGCACACTTCAGAAAAGAAAATCATATACAGAGATTTCAAGGCCTCAAATATATTACTTGATGGGAGTTTCAATGCAAAAATTTCTGATTTTGGCTTGGCTAAATTAGGGCCTACTGGAGAACAATCACATGTGACTACCAGGATCATAGGCACATATGGTTATGCTGCCCCAGAATATGTAGCCACAGGGCACTTGTATGTGAAGAGCGACGTGTACGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGTTTGAAAGCACTCGATCCAAAGAGGCCATCTGGGCAGCATAATCTGGCTGAGTGGGGAAAGCCATATCTCACCAGCAAAAAGAAGTTGAAAACCATAATGGATGCCAGAATAGAGGGTCAATATTCACTCAGTGCAGCATTTGAAGCAGCTCAGCTTATTCTCAAGTGCCTAGAACCTGACCCCAGAAAACGCCCTGGAATGAAGGATGTAGTGGAGGTATTGCAAGGTATTGAAGCTGCCCAAAACAAGTCAAAAGGTTCCAAGAAATCCTGCCAATCTTCACCTCATCATCATCATAAGAAGCCTATTCATCACCGTTCAGTTCATGATGGCCATACAATCGTCAGTCTATGA 1299 0.4342 MYKFKQHPISNYPNTPIDFPITLKKKKTPLSIFSHSSLPFSSSLPQLLLPLPLPLILQFMLILLTQLIWVSASLLSLPVVSRLAPKGLIIQDQRVLFGDLKAATKNFKLDSLLGEGGFGKVYKGWLDEKTLSPAKAGSGMMVAIKKLNPESMQGFQEWQSEVNFLGSLSHPNLVKLFGYCWEDDELLLVYEFMPKGSLESHLFRRVSNLEPLSWNTRLKIVIDAAQGLAFLHTSEKKIIYRDFKASNILLDGSFNAKISDFGLAKLGPTGEQSHVTTRIIGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLKALDPKRPSGQHNLAEWGKPYLTSKKKLKTIMDARIEGQYSLSAAFEAAQLILKCLEPDPRKRPGMKDVVEVLQGIEAAQNKSKGSKKSCQSSPHHHHKKPIHHRSVHDGHTIVSL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0242 432 Pfam Protein tyrosine and serine/threonine kinase 108 389 IPR001245 GO:0004672|GO:0006468
Lele55g0242 432 FunFam Serine/threonine-protein kinase PBS1 193 408 - -
Lele55g0242 432 SUPERFAMILY Protein kinase-like (PK-like) 92 394 IPR011009 -
Lele55g0242 432 MobiDBLite consensus disorder prediction 394 432 - -
Lele55g0242 432 Gene3D Transferase(Phosphotransferase) domain 1 193 417 - -
Lele55g0242 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lele55g0242 432 CDD STKc_IRAK 113 392 - -
Lele55g0242 432 FunFam Serine/threonine-protein kinase BIK1 88 192 - -
Lele55g0242 432 MobiDBLite consensus disorder prediction 405 422 - -
Lele55g0242 432 ProSitePatterns Protein kinases ATP-binding region signature. 113 146 IPR017441 GO:0005524
Lele55g0242 432 Gene3D Phosphorylase Kinase; domain 1 93 192 - -
Lele55g0242 432 ProSiteProfiles Protein kinase domain profile. 107 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0242 432 PANTHER OS01G0588500 PROTEIN-RELATED 96 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0242 Lele-ChrLele55 1487374 1490598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0242 90 425 Glycoside Hydrolase AT3G07070 45.858 2.12e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele55g0242 PK_Tyr_Ser-Thr 3.4e-48 CL0016