Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0238 ATGCAAAACCCTTCGAAAGATTCCAGAACCAGCTCTAAATCTGATCCTCCCTGTCCCCCTGATCAAACCCCTCCTCCTCCTTCTGATCCCTCTCAAACTGTCGCCGGTGATGTCACCGCCACTGAAGAAGGAGGAAGTAGCGTGGGAGGTGTGGTGGCCAGCTCCGATGCCGAGACAGTCCAAGTGGTGGGCCCTACTCCTCCACCCGGGGCTGAAGGTGGGTCCTCTGCGGCGTTGGTGAGTGTGGAAGGTGGAGTGGTGGTGGCTCCCACGCCTCCGGAGAAACAGTGTAAACAGAAAAGAAAGTCGGCTCAACTGTCAGATCCTCCGCCTTGGCCTCCGAAATGCAACGAGTGCGGGAAAGAGTTCCCCAGTTGGAAAGCTGCGTTTGGACATATGAGGGCACACCCTGATCGCGAATATCGAGGTTTCTTCAAACCTCCTACTTCTTCATCATCATCATCACCAAGGCAACGCGTTCGTCTAGGAGAGAATATTAATACAGGTGAAGGAGAGAAGGGAGCATCATCGGCGGCTACCGGAGGGGTTGGGTTTGATCTGAATCAGCCGACGACGGAGGAAGTGGAATCTTCTAATTCTGAGGCAGCGACACCCAGAAATGAAGCACTGGACTCTTCTTCTTCGGCTGCAGAGAAGAAAGTCGGGTTTGACCTAAATCAACCTCCTCCTTCTGAAGATGATAATGATCAACACCAGCCCTAA 723 0.5325 MQNPSKDSRTSSKSDPPCPPDQTPPPPSDPSQTVAGDVTATEEGGSSVGGVVASSDAETVQVVGPTPPPGAEGGSSAALVSVEGGVVVAPTPPEKQCKQKRKSAQLSDPPPWPPKCNECGKEFPSWKAAFGHMRAHPDREYRGFFKPPTSSSSSSPRQRVRLGENINTGEGEKGASSAATGGVGFDLNQPTTEEVESSNSEAATPRNEALDSSSSAAEKKVGFDLNQPPPSEDDNDQHQP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0238 240 MobiDBLite consensus disorder prediction 146 162 - -
Lele55g0238 240 MobiDBLite consensus disorder prediction 1 115 - -
Lele55g0238 240 MobiDBLite consensus disorder prediction 182 214 - -
Lele55g0238 240 MobiDBLite consensus disorder prediction 139 240 - -
Lele55g0238 240 Pfam C2H2-type zinc finger 115 138 - -
Lele55g0238 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Lele55g0238 240 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 153 - -
Lele55g0238 240 MobiDBLite consensus disorder prediction 1 16 - -
Lele55g0238 240 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Lele55g0238 240 MobiDBLite consensus disorder prediction 17 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0238 Lele-ChrLele55 1466533 1467437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0238 116 160 C2H2 Transcription Factor Family AT4G35280 48.000 5.99e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g0238 zf-C2H2_6 9e-06 CL0361