Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0202 ATGGCTCTTACAGGCCTGGTTTCGCTCGTGTTGGATTTTATTGGCCTTGTCCCAGATAAGATCTATCATCAGAAGCAGGCAATTTCAAGTGAATCATCAGCAGAAGCACCGAGGTTGATCGAAGTTGATTGGTGCTGTGTGTGTTTGTCTAGGTTAAAGGAGAAAGACGAGACGAAGGTTCTTCCTTGCTTTCACAGATTCCATAGACAGTGTGTAGATAAATGGCTCAATAAGGGTCGCCACAAAACATGTCCCCTTTGTCGTTTCTCGATGGTGGCAGAAGATCAGAATAAGTCTCTTGCTTCTGCAGAATTCACTGAGGATATGCTTGATGATCCTGTTCATATGGAATTTATTTCGCCCCCTAACTTGTGCTATTGGTGA 384 0.4375 MALTGLVSLVLDFIGLVPDKIYHQKQAISSESSAEAPRLIEVDWCCVCLSRLKEKDETKVLPCFHRFHRQCVDKWLNKGRHKTCPLCRFSMVAEDQNKSLASAEFTEDMLDDPVHMEFISPPNLCYW 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0202 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 104 IPR013083 -
Lele55g0202 127 ProSiteProfiles Zinc finger RING-type profile. 45 88 IPR001841 -
Lele55g0202 127 SMART ring_2 45 87 IPR001841 -
Lele55g0202 127 Pfam Ring finger domain 44 88 IPR001841 -
Lele55g0202 127 PANTHER TARGET OF ERK KINASE MPK-1 26 94 - -
Lele55g0202 127 SUPERFAMILY RING/U-box 44 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0202 Lele-ChrLele55 1247276 1248002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0202 29 91 C3H Transcription Factor Family AT1G26800 40.299 7.12e-13 60.8