Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0188 ATGTTCATACTTTCAAAATTAATTCCCACCAATTTTTCCTTCACCCTCCACCTTGCTCCATTCCTTACGACCCTCAATTTCTCTTCGCGCGCCCTTACAAATAAACAAAAGTTTCTGACCATAGAAGCATTTACCACCCTGTTGCGATCATGTTCCTCGAATCCATATCAGCTGAAACAAATCCATGCCCTCCTCCTCACATCAGGCCTCTTCATCAAGAACAGGCTTCTGACGCGTCTTCTCACCAGATTCATCGCATTGGACGATATGCTGTATGCCCGTCAACTGTTCGATGAAATGCATAAGCCACGGACTTTCTTGTGGAACACCCTGATCATAGGTCACTTGCAAAATGGCCAACCCAATGAAGCTGCCTCCATTTATAAGCGAATGCATCTTCTCGGTGTACGTCCTGATTCGTTCACATTTCCATTCGTCATCAAGGCTTGTGCTGAGCTGCCTGAATTCCAGGCTGCGGGTCCTACTGCGCATGCCCAGGTGGTGAAATATGGGGTCGAGTTTGTTGCAGTGATAAGGACTGAATTGATGATAATGTATGTCAAACTTGGAGAGCTGGGTTTAGCTGATTTTTTGTTTAAGACCATGGTTGAAAGAGATATAGTGGCATGGAATGCTTTCATTGCGGCATGTGCCCAAAATGGACATGGTGTTTTGGCTCTTGCTTTGTTTCGGGAAATGGGTTCAACTGGAACTCGGCCAGATGCTGTGACTTTGGTGAGTGCTCTTTCAGTTTGTGGCCAATTAGGGTGCTCGGATACTGGGGAGGAAATTTATCGTGTTGCAAGAGAAGAAAGGATCGATTGCAACATAATTGTTGAAAATGCACGGCTAGACATGCATCTGAAGTGTGGTAATATCGACTTTGCGGCTGAATTGTTTGAGAAAATTCCTCGCAGGAATGTAATTTCATGGAGTACGATGATTTTAGGATATGCTATTAATGGGCAAAGTGGAAAGGCATTATCCTTGTTTTCTAGGATGCAGAGAGAGGGATTGCGACCAAATCATGTTACGTATCTAGGGGTTTTGTCAGCTTGTAGCCATGCTGGACTAGTGAGCCAAGGCTGGAGATATTTTAATGGGATGTCTCGATCAGACGATGAAAGCATTAAACCCAGGAAAGAACATTATGCGTGCATGGTTGATCTTCTTGGCCGATCAGGACGTCTTGAAGAAGCGTATAACTTCATCAGAAGCATGCCTATTCAGGCTGACTCGGGAGTATGGGGGGCTCTATTGAGCGCCTGTGTTACACGCCAAAACCTGGAATTGGGCCAATATGCCGCAGGTCGTCTTTATGAACTAGCTCCTGATGTTGCTTCATACCAGGTTCTAATGTCAAATATGTATGCATCTGCTGGGAGGTGGGACTATGTTAAAATGGTGAGGCAGAGGATGAGGAAGAAGGGTGTCAGAAAAATAGCTGCTTATAGCTCAGTCGAGTTTAATGGTGAGTTACATGTTTTCTATGGGGGAGATAGGTCACATCCACAGTCAGAGATTATATATGCAAAGTTGGATTTTTTGATTAAACAAATGAAGAGTATGGGTTACATTACAAAGACCAATTCTGTGCTCCATGATGTGGAATTGGAAGAGAAGGAATCAATTATCAGCACTCACAGTGAAAAGCTCGCCATAACATTTGTTTTGATTAATGTAGTGCCTGAACTCCCCATCAGAGTGATCAAGAATTTGAGAATATGTGATGACTGCCATACTTTCTCTAAATTTGTCTCCCAAATTTCATCAAGAGAGATAATTATGAGAGATAAAATTCGTTTTCATCATTTCAGGAATGGAGTTTGTTCATGTAAGGATTTCTGCAAGCAAAGCCCTGGAGTTGGACAGTGCCAAAAATCTGTTATTTTAATAAATTTCGGGGCTGCATTCTGGACTTGGATTTTCATGAATGATCGATTAACATTGAAGAAGTCAGCAGTCTGTATCCTCTCTATGTCTCAGACACTGATCAGAACTCAGAATTGTGAGTTTGACGTGTCTGTCAAGTGCCCTCAGAAATGGGAATCCCAAGCAGTTCATCCATTGATTGTATGGGTGGTTCACACCAGCCAGGATGGATTTGCTCCCGACAAGATGATATCAGATATGCTCCCAGATCAACACTTTATGGTTAGACACTTAAAAGCTGAGGAAGTTGAACCTGAAAGGGTTCAACTTGTAGTACCTACGACACTTGTCTTAAGTCACAATGCATACAGTATCGTCATCTGTGTAGTACAGAGCATATCCAAGTATACTATCAGTAACAGTTTCTCGTTGTGGAGCTCATTGAATGCCTTCAAGCTTCACTCTCTCAGTACTCCAAATTCCACCCTTAATTCTGCTGCACCTCCCAAAATCATACCTTTCTGTATATGCACTCACTGCACCAATCTCATCACTTTGAATCATCCTCTGGGAGATGAAGGAGCAAGTACAACAAGTAGGGGGTTGCATGGGCAATCTCAGCAAAGCTCGAGGTGGAGTCCAACGCCAGCACAGTTACTGATGCTTGAAGAACTGTACAGACAAGGGACGAAGACGCCGACGGCCGAACAAATACAGCAAATAGCTTCACAGCTACGTCGTTTTGGGAAGATCGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAAGCAAGAGAGCGCCAGAAACGACGTCGCCGGGATATGGAGGAAGCAGCTTCTGATTCCGCTGAAGACAAACAACTGTACGTTGTTAATGTGAGAAGCTCAGAAGAAAAGCAAGGCCCTGCAGGGTTGAGAGGGACAGGTTATCAAGTTAAAGAGACAAAGAAGTGGGCATCTTCTCCAAACTGTAGTGCCCTTCCACAGGAACTAGCAGAGAAAAGAACGCAAGTTTTGAAACCAGAGAAAACAACATCTCTCTCACAAAAGTTTACCTGTCAAAATCATAATTTACCATTTATACTCAACAGAGAAAATTGCACCTTCTGTGATGAAGAAGAATATTCAAACGCCAGAACCCTTGAGCTTTTTCCTCTTAAGAGGGGGGACCAACACGGCATGTCTCTCAATGACAGCAAATCTAGGCTTTGTGCATCAACTTCTCTGGGCACTGAAATTGCCACCTCATGCCAGTTTTTTGAGTTCCTTCCCCTGAAAGACTGA 3159 0.4359 MFILSKLIPTNFSFTLHLAPFLTTLNFSSRALTNKQKFLTIEAFTTLLRSCSSNPYQLKQIHALLLTSGLFIKNRLLTRLLTRFIALDDMLYARQLFDEMHKPRTFLWNTLIIGHLQNGQPNEAASIYKRMHLLGVRPDSFTFPFVIKACAELPEFQAAGPTAHAQVVKYGVEFVAVIRTELMIMYVKLGELGLADFLFKTMVERDIVAWNAFIAACAQNGHGVLALALFREMGSTGTRPDAVTLVSALSVCGQLGCSDTGEEIYRVAREERIDCNIIVENARLDMHLKCGNIDFAAELFEKIPRRNVISWSTMILGYAINGQSGKALSLFSRMQREGLRPNHVTYLGVLSACSHAGLVSQGWRYFNGMSRSDDESIKPRKEHYACMVDLLGRSGRLEEAYNFIRSMPIQADSGVWGALLSACVTRQNLELGQYAAGRLYELAPDVASYQVLMSNMYASAGRWDYVKMVRQRMRKKGVRKIAAYSSVEFNGELHVFYGGDRSHPQSEIIYAKLDFLIKQMKSMGYITKTNSVLHDVELEEKESIISTHSEKLAITFVLINVVPELPIRVIKNLRICDDCHTFSKFVSQISSREIIMRDKIRFHHFRNGVCSCKDFCKQSPGVGQCQKSVILINFGAAFWTWIFMNDRLTLKKSAVCILSMSQTLIRTQNCEFDVSVKCPQKWESQAVHPLIVWVVHTSQDGFAPDKMISDMLPDQHFMVRHLKAEEVEPERVQLVVPTTLVLSHNAYSIVICVVQSISKYTISNSFSLWSSLNAFKLHSLSTPNSTLNSAAPPKIIPFCICTHCTNLITLNHPLGDEGASTTSRGLHGQSQQSSRWSPTPAQLLMLEELYRQGTKTPTAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRRDMEEAASDSAEDKQLYVVNVRSSEEKQGPAGLRGTGYQVKETKKWASSPNCSALPQELAEKRTQVLKPEKTTSLSQKFTCQNHNLPFILNRENCTFCDEEEYSNARTLELFPLKRGDQHGMSLNDSKSRLCASTSLGTEIATSCQFFEFLPLKD 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0188 1052 MobiDBLite consensus disorder prediction 818 838 - -
Lele55g0188 1052 FunFam Pentatricopeptide repeat-containing protein 121 260 - -
Lele55g0188 1052 Pfam PPR repeat family 103 151 IPR002885 -
Lele55g0188 1052 Pfam PPR repeat family 306 354 IPR002885 -
Lele55g0188 1052 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Lele55g0188 1052 Gene3D Tetratricopeptide repeat domain 30 161 IPR011990 GO:0005515
Lele55g0188 1052 Gene3D Tetratricopeptide repeat domain 278 487 IPR011990 GO:0005515
Lele55g0188 1052 Pfam PPR repeat 384 407 IPR002885 -
Lele55g0188 1052 Pfam PPR repeat 208 234 IPR002885 -
Lele55g0188 1052 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 205 553 - -
Lele55g0188 1052 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Lele55g0188 1052 FunFam Pentatricopeptide repeat-containing protein mitochondrial 261 370 - -
Lele55g0188 1052 Pfam E motif 428 488 IPR046848 -
Lele55g0188 1052 Pfam Homeodomain 833 893 IPR001356 GO:0003677
Lele55g0188 1052 SUPERFAMILY Homeodomain-like 828 896 IPR009057 -
Lele55g0188 1052 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Lele55g0188 1052 ProSiteProfiles 'Homeobox' domain profile. 829 894 IPR001356 GO:0003677
Lele55g0188 1052 Gene3D - 826 893 - -
Lele55g0188 1052 FunFam Pentatricopeptide (PPR) repeat-containing protein 372 535 - -
Lele55g0188 1052 CDD homeodomain 835 889 IPR001356 GO:0003677
Lele55g0188 1052 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Lele55g0188 1052 TIGRFAM PPR: pentatricopeptide repeat domain 208 242 IPR002885 -
Lele55g0188 1052 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Lele55g0188 1052 Pfam DYW family of nucleic acid deaminases 524 615 IPR032867 GO:0008270
Lele55g0188 1052 Gene3D Tetratricopeptide repeat domain 162 276 IPR011990 GO:0005515
Lele55g0188 1052 SMART HOX_1 831 898 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0188 Lele-ChrLele55 1156693 1165076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0188 59 615 Glycoside Hydrolase AT3G49170 38.475 7.62e-125 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele55g0188 DYW_deaminase 3.2e-36 CL0109