Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0168 ATGTTTGCCTCAACGATCCTAACATCGTCTAAACTGAAACCTTTGCATTTCGTGTTACTCCCACCAAACACCAACTTCGAAATCTTCCCAACTGGAAGAAGAATATACCGGAGAAGCAGAGTGTCAGCTTATTGTAAATTAGCCCATCACAGTTGCCGTCTTCACCCGAAATCGAACACTAGACCTGTAGTTGCCACGAGGGTCAGTAATGGTGATGATGGGGCGTTTGATGCTGCTCCACAACAGTCTTCCCCTCCTCCTCCTCCTGACATTGAAGAAGTGAAGAGTACCTCTTCTTGCCTCGGTGATGGTTATGTGGCCTTGTTTGTTCGAATGTTAGGCTTAGATCATGATCCTCTTGATAGAGAACAGGCTATAATTGCTCTGTGGAAATATTCACTTGGCGGAAAGCAGTGTGTTGATACTTTAATGCGATTTCCTGGCTGTATTAATCTTACTGTGAACCTCCTCAGATCAGATTCTAGTTCATCATGTGAAGCAGCTGCAGGCCTTCTGCGATCTCTGTCTTCAGTCAATCTATACAGGAATTCGGTAGCAGAGAGTGGAGCAATAGAAGAAATAAACAGACTGCTGAGGAAGTCTTCCTTGGCTCCTGAGGTGAAGGAGCAGAGTATAAGTACATTGTGGAATTTATCTGTGGATGAGAAGCTCCGCATTAAACTTGCAAGGAGTGATATCCTGCCATTGATCATTAAGTACCTTGAAGACGAAGATGTAAAAGTGAAGGAAGCTGCGGGAGGCATATTGGCAAATTTAGCTTTGAACCATGTTAACCACAGCATTTTGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAACTTCTGATCCTGAAGGATCCAAAGTCCTTAAAAAGGAAGCAAAAAATGCATTGCTGGAATTTGTTAGGGATGAATATTATAAAATTCTTGTCGTTGAGGAAGGTCTGGTTCCTGTGCCACTGATTGGTGCTGAGGCATACAAGTCATTCTCCCCTGGTCTGCATTCGTGGCCCAAATTACCAGATGGTACAGAGATTGAACGGGCTTCTCTAAAACCTTCCACGTATGGTGCATCAGAATTACTTCTTGGACTTAATATTGATGAAAAGAGTGCTAACATAGAGGAAGCAAAAATGAATGCGATTGTGGGACGGACACAACAACAATTCCTTGCTCGTATTGGGGCTATAGAATGGGAAGGAAAAAGCTCATCTGATTCTGAAAGCTCTGATAGGCAACAACTTACACTTTTACCTTGGATGGATGGTGTTGCTCGCTTAGTACTTATTCTAGAACTAGAAGATAAGTCTGCCATAAAAAGGGCTGCAGAGTCAATAGCTGATGTATCTATCAATGAACATATTCGCATCGCATTCAAGGAGGCTGGAGTTGTTAAGCATTTAATTCGGCTTTTGAATTGTGATGCTGCTGCTGTCAGATTGGCTGTAACTCAAGCTTTGGAGAGGTTGTCTGCCAGCAATGGAGTCTGCCCGAAAATTGAATCTGAGGGAGCGTTAGGCCCTTTAATTAATATTCTAAAATGCTCAGAGATTTCTGAAACTACTGCGGAAAAGTCTTTGAATACAATTGCTCGCATGCTAGACCCCAGTAAAGAGATGAAATTGAAGTTTTATGATGGACCAGTTAATGGATTTAAGAAGGCCTTAAGTGGAGTTAGAAATGATGCTGTTTCAGCTAGCTTTAGTACCACTGAATATCCGATATCAAAGACCACTACCAGGAATGATGTATTGGATTCTGCTTTTGTAGCCCGCCTTGTTGAGATTCTGAAGTCCTCTTCTCCCAGTTTACAAGGAAAAGCTGCATCAGTTCTAGAGTTTGTTGCTTTGACTGACCCAACTATGGTCTCTATTATATCTGTAGATATTGAATCTGCTCTCGATGCTGTCTTTCAGCAAAAAATTTTGAGAATTTCAGGTGGAGAACCTGATGTAGAAGATCAGGTTTCAGAAGCATACCCGATTGAAGTTGAAGAAGCTGGGCTTGCCATATCAGCAGCATCCCGGTTAATGACAAGACTACTCGACTGTCAGCATTTTTGCGACAAAGTAAATTCCTTCCATTTCATTGGCTTGCTTCGAAAACTCCTCAAGTCTTGTATTCCTCTCCACAGCAAAGACTGGGTGGCTGCTTGCCTAATTAAACTCAGCTCTCTCTCCAGTGACAACCCAAAAAGTCTTGATCCAATCAATGTGGAAGTTACCCTTTATGAGACAATCCCAAGACTCATAGAACAGATAAAAACTTCATTCTCTCTGGAAGCACAGGAATCTGCTGTTGAAGAACTGAACAGAATAATATCTGAAGAAGTGGAGCATTCTGCTAGGGCCATTGTGGCGGAGGGGGCAATAGAGCCATTGGTGAAGCTGATAGAAGAAGGAAGTGGAAGGGCGGTTGAAGCAGGATTGGCCATATTGTATAATCTGAGCATGGAACCTGAGAACCATTCATTGATTCTGGCCGCTGGAGCAGTCCCTGTATTGAGAAGGATTGTGCTCTCACAAAGGCCACAATGGGGAAAGGCACTTCATTTACTCAGGAATTTGCCTATTTGA 2583 0.4266 MFASTILTSSKLKPLHFVLLPPNTNFEIFPTGRRIYRRSRVSAYCKLAHHSCRLHPKSNTRPVVATRVSNGDDGAFDAAPQQSSPPPPPDIEEVKSTSSCLGDGYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKQCVDTLMRFPGCINLTVNLLRSDSSSSCEAAAGLLRSLSSVNLYRNSVAESGAIEEINRLLRKSSLAPEVKEQSISTLWNLSVDEKLRIKLARSDILPLIIKYLEDEDVKVKEAAGGILANLALNHVNHSILVEAGVIPKLAKFLTSDPEGSKVLKKEAKNALLEFVRDEYYKILVVEEGLVPVPLIGAEAYKSFSPGLHSWPKLPDGTEIERASLKPSTYGASELLLGLNIDEKSANIEEAKMNAIVGRTQQQFLARIGAIEWEGKSSSDSESSDRQQLTLLPWMDGVARLVLILELEDKSAIKRAAESIADVSINEHIRIAFKEAGVVKHLIRLLNCDAAAVRLAVTQALERLSASNGVCPKIESEGALGPLINILKCSEISETTAEKSLNTIARMLDPSKEMKLKFYDGPVNGFKKALSGVRNDAVSASFSTTEYPISKTTTRNDVLDSAFVARLVEILKSSSPSLQGKAASVLEFVALTDPTMVSIISVDIESALDAVFQQKILRISGGEPDVEDQVSEAYPIEVEEAGLAISAASRLMTRLLDCQHFCDKVNSFHFIGLLRKLLKSCIPLHSKDWVAACLIKLSSLSSDNPKSLDPINVEVTLYETIPRLIEQIKTSFSLEAQESAVEELNRIISEEVEHSARAIVAEGAIEPLVKLIEEGSGRAVEAGLAILYNLSMEPENHSLILAAGAVPVLRRIVLSQRPQWGKALHLLRNLPI 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0168 860 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 232 274 IPR000225 GO:0005515
Lele55g0168 860 SUPERFAMILY ARM repeat 427 847 IPR016024 -
Lele55g0168 860 MobiDBLite consensus disorder prediction 74 94 - -
Lele55g0168 860 Gene3D - 667 858 IPR011989 -
Lele55g0168 860 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 31 859 - -
Lele55g0168 860 Gene3D - 420 643 IPR011989 -
Lele55g0168 860 Gene3D - 92 326 IPR011989 -
Lele55g0168 860 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 791 833 IPR000225 GO:0005515
Lele55g0168 860 SMART arm_5 779 820 IPR000225 GO:0005515
Lele55g0168 860 SMART arm_5 178 220 IPR000225 GO:0005515
Lele55g0168 860 SMART arm_5 136 177 IPR000225 GO:0005515
Lele55g0168 860 SMART arm_5 579 619 IPR000225 GO:0005515
Lele55g0168 860 SMART arm_5 262 305 IPR000225 GO:0005515
Lele55g0168 860 SMART arm_5 221 261 IPR000225 GO:0005515
Lele55g0168 860 SMART arm_5 454 494 IPR000225 GO:0005515
Lele55g0168 860 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 222 IPR000225 GO:0005515
Lele55g0168 860 SUPERFAMILY ARM repeat 104 524 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0168 Lele-ChrLele55 1062945 1068313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0168 148 321 U-box Gene Family AT2G23140 31.034 5.86e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1311 53 21472743 21478080 Lele55g0168 55 1062945 1068313 hybridization
Lele54g1287 54 18087348 18093313 Lele55g0168 55 1062945 1068313 hybridization