Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0161 ATGAACAAGCTTGTCTTCAACTGTTCCATCGCTTCCATGTTTCTTATCATTTACTCTTTCATCGTTTTGCATGGTACTCAAGCTTCGTCCTTATCTTGCCTCCATACTCCATACCCTCATGTCTGCAATCACTACATGACCACCAATACACTTTCAACTTCTTCTTCTTCCTCCACCTTCCATGATATGGCTCTTAGGGTCACTTTGGACCAAGCCATTGAAGCCCACCAGCTTGTTTCTACCATGAAACTTGACAATCACTTCACAGACAAGCTAGCCAAGTTGGCCTGGACCGATTGCTTAGAGCTCTATGAAGACACCGTTCACCATCTTAACCGCTCTGTTACGAGCTCTACAAACCTAAACGATAGGCTCACCTGGTTAAGTGCCTCCATTGCCAACCACCAAACTTGCCAAAATGGCTTCCTTGACTTCAACCTTCATGCACACCTCAGATTCTTGCCAGACATGCTCACTAACTTCTCCAAATTGATCAGCAATTCCTTAGCCATTACCAGTGCCATGTCGATGTCCTCGTCGTCGTCATTAGGACAAATTGATAATAATAATAATGGTGGGAGGAAGTTGCTGTTTAAAGGATTCCCCGACTGGGTTTCCAGCTCGGATAGGAGGCTTCTTGCGGCGGGGCCAGTGGGGGCTGATGTGGTGGTGGCGAAAGATGGGAGTGGGCACTATATGACGATAACGGAGGGGGTGGAGGCGGCGAGTAAGTTGAGTGGCGGCGGAGGGAGGAGGGTGGTGGTACACGTAAAAGGGGGTGTGTATAAAGAGAACGTAGTGATAAAGAGGACAATGAAGAACCTGATGATCGTCGGAGATGGGATTGGTGTTACCGTTGTTTCGAGTAGCAACAATGCTCAAGAAACCACCACTTTTCGTTCTGCTACTTTTGGTGTTTCTGGGGACAACTTCATGGCCCGAGATATAACCTTCGAGAACACCGCCGGGCCTGGGAGTCACCAGGCGGTGGCTTTTCGCTCTGGCGCCGACCACTCTGTGTTCTACCGGTGCAGCTTCAAGGGCTACCAAGACACTTTGTACGTCTACTCACAGCGCCAATTCTACCGTGACTGCGATGTCTACGGCACCGTGGACTTCATCTTCGGCGACGCAGTCGCTATCCTCCAGAACTGCAACATCTACGTGAGAAGGCCGATGAGCAACCAGCAGAACACGGTGACGGCGCAGGGGAGATCCGACCCAAACGAGAACACCGGCATTATCCTCCACGGCTGCCGCGTGACTGCATCGTCAGACATGCGGCCGGTGCAGGGCTCGTTCAAGACCTTTCTGGGCCGGCCGTGGAAGGAGTACTCGAGGACGGTGGTGATGAAGAGCAACCTCGACGGGCTGATCCACCCGGAGGGTTGGATGCCGTGGAGTGGGAACTTCGCTCTGAAGACTCTATATTACGGCGAATATATGAACACAGGAAGTGGAGCCGCCACTGGTGGAAGAGTGAAATGGCCAGGGTTTCATGTGATCACGAGTCCGCTGGAGGCCGGGAAATTCACAGTTGGGAATTTTCTGGCCGGGCAGTCGTGGATTGCCGGCACCGGCGTACCGTTCGACGCAGGGTTGTGA 1605 0.5209 MNKLVFNCSIASMFLIIYSFIVLHGTQASSLSCLHTPYPHVCNHYMTTNTLSTSSSSSTFHDMALRVTLDQAIEAHQLVSTMKLDNHFTDKLAKLAWTDCLELYEDTVHHLNRSVTSSTNLNDRLTWLSASIANHQTCQNGFLDFNLHAHLRFLPDMLTNFSKLISNSLAITSAMSMSSSSSLGQIDNNNNGGRKLLFKGFPDWVSSSDRRLLAAGPVGADVVVAKDGSGHYMTITEGVEAASKLSGGGGRRVVVHVKGGVYKENVVIKRTMKNLMIVGDGIGVTVVSSSNNAQETTTFRSATFGVSGDNFMARDITFENTAGPGSHQAVAFRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRDCDVYGTVDFIFGDAVAILQNCNIYVRRPMSNQQNTVTAQGRSDPNENTGIILHGCRVTASSDMRPVQGSFKTFLGRPWKEYSRTVVMKSNLDGLIHPEGWMPWSGNFALKTLYYGEYMNTGSGAATGGRVKWPGFHVITSPLEAGKFTVGNFLAGQSWIAGTGVPFDAGL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0161 534 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Lele55g0161 534 FunFam Pectinesterase 216 534 - -
Lele55g0161 534 SMART PMEI_2 24 171 IPR006501 GO:0004857
Lele55g0161 534 Pfam Pectinesterase 221 519 IPR000070 GO:0030599|GO:0042545
Lele55g0161 534 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Lele55g0161 534 Pfam Plant invertase/pectin methylesterase inhibitor 32 171 IPR006501 GO:0004857
Lele55g0161 534 SUPERFAMILY Pectin lyase-like 217 533 IPR011050 -
Lele55g0161 534 PANTHER PECTINESTERASE 18 524 - -
Lele55g0161 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 175 IPR035513 -
Lele55g0161 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 173 IPR006501 GO:0004857
Lele55g0161 534 Gene3D - 216 534 IPR012334 -
Lele55g0161 534 CDD PMEI-like_3 31 171 - -
Lele55g0161 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 177 IPR035513 -
Lele55g0161 534 ProSitePatterns Pectinesterase signature 1. 249 268 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0161 Lele-ChrLele55 1017244 1019592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0161 13 534 Carbohydrate Esterase AT1G23200 51.825 0.0 536