Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0150 ATGGAGAGGGACTTCTTGGGTCTAAGGTCAAAAGAACCATTAGCTATGGTGAAGGAGGAGATTAACAATGATGGATGCAAAGATTCAGGCGTGTCTTCTCCTTATTCAGCTGTTCATCTTCTGTCGTTTTCTACTTCTTCACACGCTTTTGCAAAATTTTTGGTTTCTCAAGATGACAAGACCAGGAAGATGGGGTCTGATCCCCTCATATCTGCTGCTGAAATCCAGAAAACTTTCAATCACGATGTGCAAAGTGGTTTTCATTTTTCCCTGACTCCGTATCCTGTACCAAATGATGTGAATTCGCTGAATCGTCCTCAAGATGTGAAGATGTTTTCAGCTCCCAATCAAGCAATTCCTATTTCCATGGGACACCCTTTCTTGAAGAACCATTTCACCTCTATGGCTTGCAATAATGTGAAGCAACAGCTGCTTGGGGGTATACCTGTTAATTTGCCTCATTTAGTACCCATCACCATCGGTTCTGTTGCCGCAATGACTGAATCATGTCTGAAGCCACCTGCACCTCCCAGTCAACTCACCATTTTCTATGCTGGTGCTGTGAATGTTTTTGAGGATATCTCTCCTGAGAAGGCACGAGCTATCATGCTGTTGGCTGCAAATGGGTTACCTTTGACTTCTAACAAGGCACAGCCGAACATTCAGGCACCAAACTCAAAGTTGGCTTCAGGTGAAGGTGTCCCTGTGAGTCAACCCATAAGTACATCGCCTTGTGCTGGTCTTTCCAGTCATCTATCTGTGTCTTTGCATATGGGTGCACAGTCAAGGAGTGGCTCAACTAGCACTGGTGAGCTTCTGGCAGCTAAAACAACTGGAGTTTCCACCACTCCTGTTAGCAAAGTGGAGCCTCCAAAAGTAGTCAATGCAACTGCTATGTTGCCTTCTGCTGTGCCACAGGCTCGCAAAGCATCATTGGCACGATTTTTGGAGAAGCGCAAAGAAAGGGTGATGAGTGCCGCAGCACCATACAACCTAAGCAAGAAAACCGAGGATGTTGTTAATTTCTCTGCAACTACTTCGGCTGGTTCTAGTATCCTATCAGCAGAGCAAGCATAG 1077 0.455 MERDFLGLRSKEPLAMVKEEINNDGCKDSGVSSPYSAVHLLSFSTSSHAFAKFLVSQDDKTRKMGSDPLISAAEIQKTFNHDVQSGFHFSLTPYPVPNDVNSLNRPQDVKMFSAPNQAIPISMGHPFLKNHFTSMACNNVKQQLLGGIPVNLPHLVPITIGSVAAMTESCLKPPAPPSQLTIFYAGAVNVFEDISPEKARAIMLLAANGLPLTSNKAQPNIQAPNSKLASGEGVPVSQPISTSPCAGLSSHLSVSLHMGAQSRSGSTSTGELLAAKTTGVSTTPVSKVEPPKVVNATAMLPSAVPQARKASLARFLEKRKERVMSAAAPYNLSKKTEDVVNFSATTSAGSSILSAEQA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0150 358 Pfam Jas motif 305 330 IPR018467 -
Lele55g0150 358 ProSiteProfiles Tify domain profile. 173 208 IPR010399 -
Lele55g0150 358 SMART tify_2 173 208 IPR010399 -
Lele55g0150 358 Pfam tify domain 175 207 IPR010399 -
Lele55g0150 358 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 71 335 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0150 Lele-ChrLele55 959501 962201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0150 44 336 Tify Gene Family AT3G17860 37.342 1.04e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele55g0150 tify 1.1e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1327 53 21574314 21577034 Lele55g0150 55 959501 962201 hybridization
Lele54g1303 54 18185870 18188555 Lele55g0150 55 959501 962201 hybridization