Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0149 ATGGACGACATGAAGGATAAATTAAAAGGTTTCATGAAGAAAGTCTCTCAGTCACCCTCCGGTAAATTCAAGGGCCAAGGAAGAGTTCTGGGATCATCCCCATCCCCATCCGCATCCCCATCTTCTGCATCCGGCAGTTCTATTCTTCTCCGTCCTAAGCAGAATGTGGGTCCAAAACCAAGTTCTGCATCGGCGAACTCTCGACCGTTGCCCCAGAAAACGATCGATTCGGAGTCAAATAGGAAGGAAGGTTCGAGTAAGTCCATCCCTGATCGCAAACCGGGTAACGGGTTCGACCCTTATGATTCATTGATGACTACTGGGAAGAGATCTAAAAATGGGTTTTCTTTGAATGTGTATGAATGTCCCATTTGTGGGGAATCGTTTAGGTCCGAGGAAGAGGTGTCTATGCATGTGGATACATGTCAGGGTAACCCAGTTGACCGTGATGACGGAAATGGCGTTTCACAATTACCTGACAATGGAGTTCAGTCAAGAGATCAATTGGAGGCTTGCATCAGTACGTATAAGTCAGGGAAGCCATCTGAGGGTTCAGTTGAAGTTGTTCTCAAACTGTTGAGGAATATTGTAAAGGAACCAGAAAACGCAAAGTTTAGGAAAATTAGGTTGACTAATCCAAAGATAAAAGAGGCTGTTAGTGAGGTTGCAGGAGGCATTGAGCTGCTGAGCTGTGTAGGATTTGAGCTAAAGGAGGAGGATGGAGAGAGATGGGCACTGATGGAAGTTCCCACGGAAGAGCAAATAAAATTGATTAAGAAAGCAATAGCATTATTGGAATCACCAGTACTACAAGAAACTGGCAAGATAGAAAATTTGGCATCTGAAACATGTGCTGAGGTGGATGAAGAGGCAGAACCTAAAAAGGTGGACAGACAGGTAAAGGTCTTCTTCGCTGTACCAGAAAGCATTGCATCAAAGATTGAGCTACCAGATTCTTTCTATAACCTTTCAATCGACGAGGTGAAAAGAGAAGCTGAATTGAGGAGGAAAAAAATTGCGGATTCTCAGCTTTTAATCCCCAAGTCGCTAAAAGAAAAGCAAGCAAAAGCTGCTAGGAGGAGGTACAGAAAAACTATGATTCGTATCCAGTTTCCAGATGGAGTGGTTCTTCAAGGTGTATTTAATCCATGGGAACCAACAACTGCTTTATATGAGTTTGCCAGCTCCGCATTGAAAGAACCATGTTTGGAATTTGACCTAATGCATCCTGTACTTGTTCAACGACGGGTCATCCCTCACTTCCCTCGAGCAGGGGAGAAAGCTGTAACACTTGAGGATGAGGACCTGGTGCCTTCAGCTCTTATTAAGTTGAAACATCATGAAACGGATTCTGTTGTTTACACTGGCCTCAGAAATGAATTGCTTGAAATCAGTGAACCGCTCTCATGA 1410 0.4397 MDDMKDKLKGFMKKVSQSPSGKFKGQGRVLGSSPSPSASPSSASGSSILLRPKQNVGPKPSSASANSRPLPQKTIDSESNRKEGSSKSIPDRKPGNGFDPYDSLMTTGKRSKNGFSLNVYECPICGESFRSEEEVSMHVDTCQGNPVDRDDGNGVSQLPDNGVQSRDQLEACISTYKSGKPSEGSVEVVLKLLRNIVKEPENAKFRKIRLTNPKIKEAVSEVAGGIELLSCVGFELKEEDGERWALMEVPTEEQIKLIKKAIALLESPVLQETGKIENLASETCAEVDEEAEPKKVDRQVKVFFAVPESIASKIELPDSFYNLSIDEVKREAELRRKKIADSQLLIPKSLKEKQAKAARRRYRKTMIRIQFPDGVVLQGVFNPWEPTTALYEFASSALKEPCLEFDLMHPVLVQRRVIPHFPRAGEKAVTLEDEDLVPSALIKLKHHETDSVVYTGLRNELLEISEPLS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0149 469 SUPERFAMILY PUG domain-like 179 263 IPR036339 -
Lele55g0149 469 Gene3D - 354 445 - -
Lele55g0149 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 468 - -
Lele55g0149 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Lele55g0149 469 MobiDBLite consensus disorder prediction 30 74 - -
Lele55g0149 469 SMART PGNneu 184 251 - -
Lele55g0149 469 FunFam UBX domain-containing protein 6 354 445 - -
Lele55g0149 469 MobiDBLite consensus disorder prediction 1 110 - -
Lele55g0149 469 CDD PUB 171 267 - -
Lele55g0149 469 ProSiteProfiles UBX domain profile. 360 444 IPR001012 GO:0005515
Lele55g0149 469 Gene3D - 172 267 - -
Lele55g0149 469 Pfam PUB domain 183 258 IPR018997 -
Lele55g0149 469 MobiDBLite consensus disorder prediction 75 89 - -
Lele55g0149 469 SUPERFAMILY Ubiquitin-like 332 444 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0149 Lele-ChrLele55 946384 950617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0149 1 392 C2H2 Transcription Factor Family AT2G01650 55.556 2.79e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g0149 PUB 3.8e-19 No_clan