Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0139 ATGCTAAATCCAGTGTTTCTGAAGCCTCCAGATGGGACTCAATGGGAAATACATTGGACAAAATATGAAAGTGGTGAGGTTTGGTTTGAGACGGGTTGGGATGAAGTTGTTAGATACTACTCATTAGGTCATGGCCATTTGGTGTTGTTCAGATATGAGGGAACTAGAACTTGTTACTTTGAGGTTAACATTTTTGACAAGAGTGCATTAGAAATAGACTACCTTCTTTATACAAACCTCCAACAAATTAATGAAGATTCTGATTCAGTTGAAATCTTGCATGAGAAACCTCTGCATAAAGTAGCGAGCCAAAAACCGCCATTATCATCTTCTAGCCGCCCTTGCAAGAAAATTAGAGCTAGAGAAGCTGAAAGGATGTCTAATCAACAAAAGATGCACTCACATGGGGATAAGCTTAAGTCCATTAAAGCAGAACCGAAACTTATCAAGCTTGAATCAGAAGAAACCGTGGGTAGAAGCACTATTTCCACTAAAAGAAGTCCAAAATCCATGGCTATTAAAAAACGAAAGGAGAAATCATTAACTTGTGATGAGAAGGACAGAGCTTTACAGAGAGTCAACATTTTCATGCCCAAAAATCCCTATTTCAAAATTGTCATGCAACCATCATACATCAAGAGCAATTTGTGGGTACCAGCAAGTTTTGGGAAACAGTATTTGAAGCAGATGGGGGAAGGAGATGTTCTCCTCCGGGTTTCAGATGGTAGAACATGGCTTGTGAAGTGCAATAGGCAAGAAGGAAATCAGCCCAAGTTCCGACTCAACCGCGGGTGGACCTCTTTTGCAAATGACAATAACTTGAATGTGGGCGATTGGTTTAATCTCAACAGCCTTGTCATAATGGCTGCAATCTTAGCTCGGAAATCACTTCTTGCTCTTCGCACTCGACAATTGGCTGTGGCAGGTCAAGGGTTGCAAGGTCCCCAAAATTATGGCTTGCGATTAAGTGCTCATTCATACTCTACCAAAAAAGATGATGAAGAAAGAGAGCAACTTGCAAAGGAAATTTCCAAGGATTGGAGTTCTATCTTTGAACGCAGCATCAACACACTATTTCTCACTGAAATGGTTCGGGGTTTAAGTCTGACGCTGAAATACTTCTTTGAGAAGAAAGTTACTATAAATTATCCATTTGAGAAGGGCCCTTTGAGCCCTCGTTTCCGTGGTGAACATGCACTCCGACGATATCCATCTGGAGAGGAACGTTGCATTGCTTGCAAACTTTGTGAAGCTATATGTCCGGCACAAGCAATCACAATTGAAGCTGAGGAGAGAGAAGATGGCAGCCGCAGGACAACAAGGTACGATATTGACATGACCAAGTGCATCTACTGCGGATTTTGTCAAGAGGCATGCCCTGTTGATGCCATTGTTGAAGGGCCAAACTTTGAATTTGCTACAGAAACTCACGAGGAGCTTCTGTATGACAAAGAGAAGCTACTTGAGAATGGGGACCGATGGGAAACTGAGATTGCAGAGAACCTGAGATCTGAAAGCCTGTATCGCTGA 1530 0.4216 MLNPVFLKPPDGTQWEIHWTKYESGEVWFETGWDEVVRYYSLGHGHLVLFRYEGTRTCYFEVNIFDKSALEIDYLLYTNLQQINEDSDSVEILHEKPLHKVASQKPPLSSSSRPCKKIRAREAERMSNQQKMHSHGDKLKSIKAEPKLIKLESEETVGRSTISTKRSPKSMAIKKRKEKSLTCDEKDRALQRVNIFMPKNPYFKIVMQPSYIKSNLWVPASFGKQYLKQMGEGDVLLRVSDGRTWLVKCNRQEGNQPKFRLNRGWTSFANDNNLNVGDWFNLNSLVIMAAILARKSLLALRTRQLAVAGQGLQGPQNYGLRLSAHSYSTKKDDEEREQLAKEISKDWSSIFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0139 509 Gene3D - 383 508 - -
Lele55g0139 509 FunFam NADH-quinone oxidoreductase subunit I 1 383 506 - -
Lele55g0139 509 TIGRFAM NuoI: NADH-quinone oxidoreductase, chain I 366 487 IPR010226 GO:0016020|GO:0016651|GO:0051539
Lele55g0139 509 SUPERFAMILY DNA-binding pseudobarrel domain 198 280 IPR015300 -
Lele55g0139 509 Pfam B3 DNA binding domain 202 282 IPR003340 GO:0003677
Lele55g0139 509 Gene3D - 2 69 IPR015300 -
Lele55g0139 509 SUPERFAMILY DNA-binding pseudobarrel domain 5 68 IPR015300 -
Lele55g0139 509 ProSiteProfiles B3 DNA-binding domain profile. 1 68 IPR003340 GO:0003677
Lele55g0139 509 CDD B3_DNA 5 66 IPR003340 GO:0003677
Lele55g0139 509 MobiDBLite consensus disorder prediction 159 180 - -
Lele55g0139 509 Pfam 4Fe-4S dicluster domain 409 463 IPR017896 -
Lele55g0139 509 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 449 460 IPR017900 -
Lele55g0139 509 SMART B3_2 202 296 IPR003340 GO:0003677
Lele55g0139 509 CDD B3_DNA 201 278 IPR003340 GO:0003677
Lele55g0139 509 SUPERFAMILY 4Fe-4S ferredoxins 383 493 - -
Lele55g0139 509 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 338 509 IPR010226 GO:0016020|GO:0016651|GO:0051539
Lele55g0139 509 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 440 469 IPR017896 -
Lele55g0139 509 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 357 493 IPR010226 GO:0016020|GO:0016651|GO:0051539
Lele55g0139 509 Gene3D - 180 287 IPR015300 -
Lele55g0139 509 ProSiteProfiles B3 DNA-binding domain profile. 201 295 IPR003340 GO:0003677
Lele55g0139 509 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 401 430 IPR017896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0139 Lele-ChrLele55 890173 897541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0139 5 278 B3 DNA Binding Superfamily AT3G18990 27.759 2.82e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele55g0139 B3 3.2e-13 CL0405