Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0110 ATGCAGAGCCAGCCCCAGCATCCCCCTGTGGCTTTGAGGTTCCATGAGCAAACCGGGAGTAAAAGAAAATACACTTTCATTCAGGCTAAAAGAGCTTGGCTCCCAAAGTTTCTGCTGCTGTGGATCATGCTGACGATGCTATTCAGTGGGTTCATCTACACTGTTATGGATGCTGATAATAAAGTTAGGAGGAGAGAGGTTCTGGGTAGCCTCTGTGAGCAAAGGGCTAGGATGTTGCAAGATCAATTTAGTGTCAGTGTTAACCATGTCCATGCCCTAGCTATTCTGGTTTCAACCTTCCACTACTACAGAAACCCATCTGCAATTGATCAGCACCGTTTGAAAATTGTATTTGGCATGGTGCAGGAGGACCGAGAGAACATTCTGAGGGCTAGGGCCACTGGGAAAGCTGTACTGACTAGCCCATTCAGGCTGTTGGGCTCTCATCATCTTGGTGTGGTTTTGACATTCCCTGTTTACAAATCCAAGCTCTCCCCAGAGCCAACTATGAAAGAGCGCGTAGAGGCAACTGCAGGATATGTTGGAGGGTCCTTTGATGTTGAATCCCTTGTGGAGAATTTACTCGGGCAGCTTGCTGGTAACCAAGCAATTTTGGTGCATGTGTATGATAACACAAACTCTACTAACCCGCTAATCATGTATGGCAACCAATATGAAGAAGGTGATAAGTCTCTTGTACATAAAAGCAAGCTTGACTTTGGAGATCCTTACAGGAAACATCAGATGATATGTAGGTATCATCAGAAGGCACCAACATCTTGGACAGCACTTACCACGGCATTTTTATTCTTTGTGATTGGTTTATTAGTTGGATACATTTTATATGGTGCTGGAATTCATATTGTCAAAGTTGAGGACGATTTCCATGAGATGCAGGAACTGAAAGTTCGAGCTGAAGCTGCTGATGTCGCCAAATCCCAGTTTTTAGCAACTGTTTCTCATGAAATTAGAACGCCAATGAATGGCGTCTTAGGAATGCTCGGTCTGCTTCTAGATACGGAATTGAGTTCAACTCAACGGGATTATGCTCAAACTGCTCAAGCATGCGGAAAAGCACTGATAGCACTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGAAAGTTAGAGCTAGAAGCAGTTCCATTTGACCTGCGTTCTATACTTGATGATGTCCTTTCTTTATTCTCTGAGAAGTCTAGACACAAAGGCTTAGAGTTGGCAGTTTTTGTTTCTGCTAAAGTTCCAGACATTGTTATGGGAGATCCAGGGAGATTCAGACAAATAATAACCAATCTAGTTGGCAACTCTGTCAAAGTTCATCTAGCTGAAAATATAAACGCTACAATGAATGGAAAATCTGAGACACATGTAAATGGGGGATCAGATGACGTTGTGCATATGGCTGGCGGTTATCAGTCCAAAACTCTTAGTGGATGTGAAGCAGCTGATGAAAGGAACTGTTGGGATAATTTTAAGCATCTAGTTGCTGATGAAGAATTTTGCTTTGATGCATCAAGTAAAAAGATGACCACTATTCAAGTTTCTGAGCAAGTCACTCTGATGGTCTGTGTAGAGGATACTGGTATTGGGATTCCCTTTGCTGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGTGGGACTGGTATTGGATTAAGCATCAGTAAGTGTTTGGTTGAATTAATGGGTGGTCAAATAAACTTCATAAGCCAACCTCATGTTGGGAGCACATTTTCCTTCACTGCAGTTTTTGGTAAATATAAGAAAAATTCTATCAGTGACGTGAAGAAACATAATGTGGAAGATCTACCTTCTAGTTTTAGAGGACTGAAAGCCATAGTGGTTGATGCAAAACCTGTTAGAGCTGCTGTGACTCGATACCATCTGAAGAGGCTTGGGATAATAGCTAAAATTGCTAGTGACATTAACAAGGCTGTTGCTTTATGCGGGAAAAACGGTTCATTGACATCTGGAATGTTACGGCCAGATATAATTTTGGTTGAGAAGGACTCGTGGATATCTGGAGAAGATGGAAGCTTCAATGTTTGGCAACTAGACTGGAAACAGAACGGACATAAAATTAAGTTGCCCAAATTGATCCTCCTTGCAACAAATATTAGTAATGCCGAGTTTGATAAAGCTAAGGCTGCTGGCTTTGCTGATACTGTGATCATGAAACCTCTGAGAGCTAGTATGGTAGGTGCTTGTCTTCAGCAGGTTCTTGGTGTGGGGAAAAAGAGACAGCAAGGAAAAGCCATGCCCAGCGGTTCTACTTTTCTTCGAGGCCTTCTTTGTGGAAAGAAAATTTTGGTGGTCGATGACAATGTGGTGAACCGGAGGGTTGCTGCAGGGGCACTGAAGAAGTTCGGAGCTGACGTGAAGTGCGTTGAGAGTGGCAAAGCGGCACTCGAAATGCTTCAATTGCCTCATAGTTTTGATGCCTGCTTCATGGACATCCAAATGCCAGAAATGGATGGGTTTGAAGCGACACGACGAATCCGGCAGATGGAAAGCATGGCGAATGAGCTGGCAAATGGGGGATCTAAGGAAGGGAATGCCTGTAAAAGTGAGTGGCATTTGCCAGTATTAGCCATGACAGCTGATGTAATTCAAGCGACCTATGATGAGTGCCTGAAATGCGGTATGGACGGCTATGTGTCGAAGCCGTTTGAGGAAGAGAATCTGTATGAAGAAGTCGCGAAGTTCTTCAAATCCAAGCCTATCTCGGACTCATGA 2772 0.4354 MQSQPQHPPVALRFHEQTGSKRKYTFIQAKRAWLPKFLLLWIMLTMLFSGFIYTVMDADNKVRRREVLGSLCEQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQHRLKIVFGMVQEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSPEPTMKERVEATAGYVGGSFDVESLVENLLGQLAGNQAILVHVYDNTNSTNPLIMYGNQYEEGDKSLVHKSKLDFGDPYRKHQMICRYHQKAPTSWTALTTAFLFFVIGLLVGYILYGAGIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLGLLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSAKVPDIVMGDPGRFRQIITNLVGNSVKVHLAENINATMNGKSETHVNGGSDDVVHMAGGYQSKTLSGCEAADERNCWDNFKHLVADEEFCFDASSKKMTTIQVSEQVTLMVCVEDTGIGIPFAAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISQPHVGSTFSFTAVFGKYKKNSISDVKKHNVEDLPSSFRGLKAIVVDAKPVRAAVTRYHLKRLGIIAKIASDINKAVALCGKNGSLTSGMLRPDIILVEKDSWISGEDGSFNVWQLDWKQNGHKIKLPKLILLATNISNAEFDKAKAAGFADTVIMKPLRASMVGACLQQVLGVGKKRQQGKAMPSGSTFLRGLLCGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHSFDACFMDIQMPEMDGFEATRRIRQMESMANELANGGSKEGNACKSEWHLPVLAMTADVIQATYDECLKCGMDGYVSKPFEEENLYEEVAKFFKSKPISDS 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0110 923 CDD HisKA 311 372 IPR003661 GO:0000155|GO:0007165
Lele55g0110 923 Gene3D CHASE domain 105 257 IPR042240 -
Lele55g0110 923 Pfam Response regulator receiver domain 781 911 IPR001789 GO:0000160
Lele55g0110 923 SMART HKATPase_4 423 598 IPR003594 -
Lele55g0110 923 Coils Coil 361 381 - -
Lele55g0110 923 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 297 377 IPR036097 GO:0000155|GO:0007165
Lele55g0110 923 Pfam CHASE domain 122 221 IPR006189 -
Lele55g0110 923 CDD HATPase_EvgS-ArcB-TorS-like 428 596 - -
Lele55g0110 923 Gene3D - 375 599 IPR036890 -
Lele55g0110 923 FunFam Histidine kinase 4 102 257 - -
Lele55g0110 923 Gene3D - 287 374 - -
Lele55g0110 923 Pfam His Kinase A (phospho-acceptor) domain 311 376 IPR003661 GO:0000155|GO:0007165
Lele55g0110 923 ProSiteProfiles CHASE domain profile. 103 250 IPR006189 -
Lele55g0110 923 Gene3D - 775 921 - -
Lele55g0110 923 Gene3D - 617 756 - -
Lele55g0110 923 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 365 593 IPR036890 -
Lele55g0110 923 SUPERFAMILY CheY-like 778 915 IPR011006 -
Lele55g0110 923 SMART CHASE_2 74 223 IPR006189 -
Lele55g0110 923 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 595 IPR003594 -
Lele55g0110 923 SMART HisKA_10 311 376 IPR003661 GO:0000155|GO:0007165
Lele55g0110 923 ProSiteProfiles Response regulatory domain profile. 623 753 IPR001789 GO:0000160
Lele55g0110 923 ProSiteProfiles Response regulatory domain profile. 780 915 IPR001789 GO:0000160
Lele55g0110 923 FunFam Histidine kinase 3 774 919 - -
Lele55g0110 923 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 912 - -
Lele55g0110 923 SUPERFAMILY CheY-like 619 754 IPR011006 -
Lele55g0110 923 ProSiteProfiles Histidine kinase domain profile. 318 598 IPR005467 -
Lele55g0110 923 FunFam Histidine kinase 4 283 374 - -
Lele55g0110 923 PRINTS Bacterial sensor protein C-terminal signature 558 576 IPR004358 GO:0016310|GO:0016772
Lele55g0110 923 PRINTS Bacterial sensor protein C-terminal signature 523 537 IPR004358 GO:0016310|GO:0016772
Lele55g0110 923 PRINTS Bacterial sensor protein C-terminal signature 582 595 IPR004358 GO:0016310|GO:0016772
Lele55g0110 923 PRINTS Bacterial sensor protein C-terminal signature 541 551 IPR004358 GO:0016310|GO:0016772
Lele55g0110 923 Gene3D - 56 104 - -
Lele55g0110 923 SMART REC_2 779 911 IPR001789 GO:0000160
Lele55g0110 923 CDD REC_hyHK_CKI1_RcsC-like 781 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0110 Lele-ChrLele55 676929 682601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0110 19 923 Histidine Kinase Gene Family AT2G01830 62.866 0.0 1182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele55g0110 HATPase_c 1.3e-28 CL0025