Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0106 ATGATGACACCAAATTTGAACTTGGAACCTGAAAATCATTCCGAAGTCAGTAGCCAAGTAGCTTCCAATATATCCTTGCAAGAAACGTCCCATGATCTTACCAAGGACAGCAACACCACTTCTTCCTGTCTCACAAATCTCACAAAACCTGAAACCGATCCCATCTCTTTTTCCCTTGACTTGACGCTCAACTTCAACTCTGGTGATGGCGAGTTGAAGCGCACGAGCGATGCCAGCAGTGAAGTGGGAGCTGAAGCACAACCTTCAGGATCAGCAGTTCCCAGGGTTTTCTCTTGTAATTACTGTAGGAGGAAGTTCTTCAGCTCTCAGGCATTGGGTGGCCATCAAAACGCTCATAAAAGGGAGAGGACAATGGCGAAGCGCGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCCTGGCGTCCCTGCCTCTTCACGGTTCTGCTTTTCGGTCTCTCGGTATCGAAGCTCATTCCGCGATGCACCAAAGACACATGCCTTCATTGAGGGCTCCCAACCTAAGAGCTGGTGCAAAATTCGAGAAAGATTATTTTGGATCACCAGTGTTCATGGAAGATGATGATAATATGGGTCCATTTTGGCCTGGGAGTTTCTGGCAGGTGGAAGGAAGAGCCAGTGTCGGTATGGGACACGAACACACTCAAAGTTCAACTACTAGTTTCGTAGCAATTGCGCCGCCACCGCCACTACCACCCCCACAACAACAGCAAACATCCACATCTCCTGATCTCACTCTGAAGCTCTAA 774 0.4845 MMTPNLNLEPENHSEVSSQVASNISLQETSHDLTKDSNTTSSCLTNLTKPETDPISFSLDLTLNFNSGDGELKRTSDASSEVGAEAQPSGSAVPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSAFRSLGIEAHSAMHQRHMPSLRAPNLRAGAKFEKDYFGSPVFMEDDDNMGPFWPGSFWQVEGRASVGMGHEHTQSSTTSFVAIAPPPPLPPPQQQQTSTSPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0106 257 FunFam Zinc finger protein 2 73 143 - -
Lele55g0106 257 Gene3D Classic Zinc Finger 77 144 - -
Lele55g0106 257 MobiDBLite consensus disorder prediction 72 92 - -
Lele55g0106 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Lele55g0106 257 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Lele55g0106 257 MobiDBLite consensus disorder prediction 1 21 - -
Lele55g0106 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 175 IPR044246 GO:0009788
Lele55g0106 257 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Lele55g0106 257 MobiDBLite consensus disorder prediction 219 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0106 Lele-ChrLele55 645326 646099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0106 91 257 C2H2 Transcription Factor Family AT1G66140 44.211 6.98e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g0106 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1346 54 18502334 18503107 Lele55g0106 55 645326 646099 hybridization