Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0105 ATGATTGGAGGGAAAGATCTTCCTAATGGTCTTGACTCCGATGGGGAGAATTCTCGGAGCAAGCTCTCAAAGCCTAAGTTTGCCCGTGGCAAGGAGAACCCTGAAGAGAAATTAGGTTATCCAGTGAAGGGTGCGTATTTTCTGAAGGATTCAGAGGAGGGTGGTGATGGACTTCTATTGAAACCCTCCAAAGTTGGGACTTCGAGCTTACAAGAGCTGACCCTCAGCTACCTTTGTGATAAGGAGATTCCTGGTAAAAGCTTGCTGAGTTCCTTGGAAAAAGTCAGTTGCAAAGGTAAAGAAGTTCTCATCTCGGAGGATTCAAATCAGGACGAGAAGTGGGTGGAACGGGATTTTCTGAATTTGAGCGAAACCAGGGAGAATTCTTCAAAGCGATCGGTTGAAGAAGAGGTTGAAAGGGAAAATAAGGACAAGAAGCCGAAGCTGGAAACGCTTAATCTCTCTCTTGCCTTGCCTGATGTCTCCCTTTCTCTTACGGCGTCCAACGCCCTGCAAAACGGTGATCAGCCGCTGAGGCCAAAGCCTGGTAAACCGTCGGCGACTACGTATTCAAATGATTATACGGCGGCTTCTCTGTCATACTCGTACTCCCATCCCTTCTCGCACAATCCAAGTTGCTCGCTTACCCGTAATTCTACCGATTTTGATTATTCCGTTAGCAAAGATGATCATATTTGGAACTGCGGAGAGGGTACGAACGGGTCAGTTCATAGTCGGTTCAAGCCGATAGGCGATGGGGTTGCCTTGTCTAATCATGGTGGTGGTGGGTTTAATTCGATCGTGCAGGGTAATAATAGTCAGTATAAAACTACAAGTTCAGATAACCATTCTTTTTTTCCATCGGAATTGCCTGCCAGGCCGAGATATGAAGCTCAGTCAGGGGACTCTAGAGGAAGGAATTCTGAGAATCTGAGAGTATTGGAAGGTTTAGATAGTGGGAAAGTAAGGAAGCTTTCTAGGCCAGAGAAAATTCTCAGAGAGATCGTGTTGGATTCTGTCCCAACCATGGCTGCTCAGTTTCAAGAGCTTACTGACGAAGTGATTACATCCACTAAGGAATACTTAAAGAATCTCATTGAGATGCCCGAGAAGAAAGAGGAATTGGTCAGCCTCCAAAATCGGCTTGAGCGAAGATCTGATCTTAATAAGGAGACTCTTTCGAAGTGCCAAAAGGGGCAGCTTGAGATTTTAGTTTCTATCAAGATGGGGCTTGCAAGCTTCTTATCTGGCAAAGTCCCCTTCTCCGAGATGGTAGAGATTTTCTTGCATTTGAGATGTAGAAATGTGAACTGTAGGAACTTGCTGCCTGTTGATGACTGTGACTGCAAGATTTGTTCTGGAAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTCTGTCTGAACTTTGATTGTGCAAGCAACACATGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGCGGCATTAAGAGGAATCTCATCAAACCTGGGCCTAGCTTAAAGGGGCCATCAGGGACCTCTGAGATGCAGTTTCATTGTAGTGGATGTGGACATGCTTCCGAAATGTTTGGCTTTGTTAGAGATGTGTTCATATGTTGTGCAAAGGATTGGGGCCTAGAAACCCTGGTGAAAGAGCTTGACTGTGTGAGGAAGATTTTCAAAGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTCAAAACTGATGACATGCTCTTTAAGCTTCAAACTAAAACCGTGTCTCCTTTGGATGCCTGCAACTATATCCTACAATTTTTCAACTATGCAGATAGCATGCCAGACTTTCCCGCTTCTGGTATATCCTCAAAGGATTTGTCCGCTTCTCAAGCTAATCTTAGGAAGGAAGCAACATCTCTTCCTCAATCTAATTCTCTAATGTCAAAGTATACTTATAACTCGGGCTATTCAAGGTCACAAGGTGATGTTCTGTCAAATGATCATCATCAGAAAGATCTCAAAACTTCTATCTTAAGTGAATTGAAAAATGAGAGTGATTTCCAGCTGGGGGCTCTGTTAAGAAAAGGTGGGTTTGATAACTTGGAGAGCATCGTGAGGATTAAGGAAGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCCCGGAGAGAAGCCGAAGGGTTCCAGAGGATGATAAGGATGAAAACGGCGCAGATGGAAGAAGAATATGCTGAAAGGCTTTCCAAGCTCTCTCTTCAAGAGACTGAGGAAACGCGGAGGAAGAAACTGGAGGAACTGAAGGTCTTGGAAAATTCCCATTGTGATTACTTTAAGATGAAAATGAGAATGCAAGTAGAGATTGCTGGTTTGTTGGAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 2388 0.4451 MIGGKDLPNGLDSDGENSRSKLSKPKFARGKENPEEKLGYPVKGAYFLKDSEEGGDGLLLKPSKVGTSSLQELTLSYLCDKEIPGKSLLSSLEKVSCKGKEVLISEDSNQDEKWVERDFLNLSETRENSSKRSVEEEVERENKDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPLRPKPGKPSATTYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDHIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGGFNSIVQGNNSQYKTTSSDNHSFFPSELPARPRYEAQSGDSRGRNSENLRVLEGLDSGKVRKLSRPEKILREIVLDSVPTMAAQFQELTDEVITSTKEYLKNLIEMPEKKEELVSLQNRLERRSDLNKETLSKCQKGQLEILVSIKMGLASFLSGKVPFSEMVEIFLHLRCRNVNCRNLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCSHWCHAACGIKRNLIKPGPSLKGPSGTSEMQFHCSGCGHASEMFGFVRDVFICCAKDWGLETLVKELDCVRKIFKGSEDRKGKELHVKTDDMLFKLQTKTVSPLDACNYILQFFNYADSMPDFPASGISSKDLSASQANLRKEATSLPQSNSLMSKYTYNSGYSRSQGDVLSNDHHQKDLKTSILSELKNESDFQLGALLRKGGFDNLESIVRIKEAEARMFQTKADEARREAEGFQRMIRMKTAQMEEEYAERLSKLSLQETEETRRKKLEELKVLENSHCDYFKMKMRMQVEIAGLLERMEATKQQWV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0105 795 CDD PHD_OBE1_like 463 522 - -
Lele55g0105 795 MobiDBLite consensus disorder prediction 125 146 - -
Lele55g0105 795 MobiDBLite consensus disorder prediction 1 37 - -
Lele55g0105 795 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 103 794 IPR004082 -
Lele55g0105 795 MobiDBLite consensus disorder prediction 269 286 - -
Lele55g0105 795 MobiDBLite consensus disorder prediction 269 289 - -
Lele55g0105 795 Coils Coil 745 765 - -
Lele55g0105 795 MobiDBLite consensus disorder prediction 17 37 - -
Lele55g0105 795 Coils Coil 697 717 - -
Lele55g0105 795 Pfam PHD - plant homeodomain finger protein 433 557 IPR032881 -
Lele55g0105 795 MobiDBLite consensus disorder prediction 170 191 - -
Lele55g0105 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 752 IPR004082 -
Lele55g0105 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 385 400 IPR004082 -
Lele55g0105 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 368 IPR004082 -
Lele55g0105 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 424 445 IPR004082 -
Lele55g0105 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 691 711 IPR004082 -
Lele55g0105 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 543 562 IPR004082 -
Lele55g0105 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 470 490 IPR004082 -
Lele55g0105 795 Pfam Coiled-coil region of Oberon 657 784 IPR032535 -
Lele55g0105 795 Coils Coil 773 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0105 Lele-ChrLele55 639513 643056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0105 433 589 PHD Gene Family AT5G57380 27.389 3.24e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1371 53 21882068 21889587 Lele55g0105 55 639513 643056 hybridization
Lele54g1347 54 18506917 18510928 Lele55g0105 55 639513 643056 hybridization