Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0078 ATGCTAGACAATAGTGCTAACTCTTCTGATGCCGCTTCCTCAGAAAATAAAGGAGTGATCCTTCCCAGAAGAAAAAGAAGACCCCCAGGCACACCAGATCCAGATGCTGAGGTGGTGTGTTTGTCACCCAAGACTCTGTTGGAATCAGACAGATATGTGTGTGAGATCTGTAATCAAGGGTTTCAAAGAGACCAGAATCTTCAGATGCATAGAAGAAGGCACAAGGTACCTTGGAAATTGCTTAAAAGGGAGAGTAGCAGTACGCAAGAGGTGAAGAAGAAGGTGTTCGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTGGCCATGCTCTTGGAGATCTCGTGGGCATTAAGAAGCATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTTCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACAAGAGGCCATTCCTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATTGAACATCAAGAAGCGTGCACTGTTCGAACGGCTTCAAGCCCAAGTCCATCTAGTGAGGCCAATTTAGTTCCATTAATGCAAGGCTTGTCAGTGCCAAAACCAACTGCATTGTTAACCTCGGACTTACAAAACAATAATCCTCCCTACACAACTTATCAGAGACATAAGAATCTAGAAGAACTCCAGCTCCTACGTTGTTCTTCTTCATCAGACGCTCGACGGAACCGAGGTTCTGATAATCATGAGGAGAATAACAACTACGAGACCGATCAAACCCACCTGAAGCTTTCAATAGGGTCATGCAGTAACAATAATAAGACCAACAAGAATGTTGGGAAAGAAGCAGAAGCAGAAGCAGAAGGAGCACCGAGACTAAGGGAAGTGGGGTGGTTGAAAGAGTGTGCGAGTGAAGAGCTCAAGTTGGCGATGGCTGAGAAGGCTTATGCAGAAGAGGCCAGAAGAGAAGGTAAGCTTGAGATAGAGATGGCTGAGATTGAGTTTGGGAAAGCGAAGAGGATAAGGAAGGAAGCACAGGAGGAGCTAGAGAAAGCTGAGGCATTGAAGAAGCAGGCCATGATGAAGACGAGTTCCACTCTGCTGCAAATTACTTGTCAGGCTTGTAAGCAACAGTTCCAATCCTCCATTGCTGTGGCTTCATCAGAAGAGACATCTCTTGTTATGAGCTGCATGTCCTCACCCACCACTGAAGGAGAAGGAGATCAATAA 1248 0.4575 MLDNSANSSDAASSENKGVILPRRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESSSTQEVKKKVFVCPEPTCLHHNPGHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQEACTVRTASSPSPSSEANLVPLMQGLSVPKPTALLTSDLQNNNPPYTTYQRHKNLEELQLLRCSSSSDARRNRGSDNHEENNNYETDQTHLKLSIGSCSNNNKTNKNVGKEAEAEAEGAPRLREVGWLKECASEELKLAMAEKAYAEEARREGKLEIEMAEIEFGKAKRIRKEAQEELEKAEALKKQAMMKTSSTLLQITCQACKQQFQSSIAVASSEETSLVMSCMSSPTTEGEGDQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0078 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Lele55g0078 415 SMART c2h2final6 52 74 IPR013087 -
Lele55g0078 415 SMART c2h2final6 96 126 IPR013087 -
Lele55g0078 415 SMART c2h2final6 132 159 IPR013087 -
Lele55g0078 415 Gene3D Classic Zinc Finger 117 194 - -
Lele55g0078 415 MobiDBLite consensus disorder prediction 242 296 - -
Lele55g0078 415 MobiDBLite consensus disorder prediction 246 263 - -
Lele55g0078 415 MobiDBLite consensus disorder prediction 1 37 - -
Lele55g0078 415 MobiDBLite consensus disorder prediction 1 15 - -
Lele55g0078 415 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Lele55g0078 415 FunFam protein indeterminate-domain 12-like 31 102 - -
Lele55g0078 415 Gene3D Classic Zinc Finger 30 100 - -
Lele55g0078 415 MobiDBLite consensus disorder prediction 264 284 - -
Lele55g0078 415 Coils Coil 334 368 - -
Lele55g0078 415 Pfam Zinc-finger of C2H2 type 52 70 - -
Lele55g0078 415 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 388 IPR031140 -
Lele55g0078 415 SUPERFAMILY beta-beta-alpha zinc fingers 51 152 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0078 Lele-ChrLele55 500063 502315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0078 23 412 C2H2 Transcription Factor Family AT2G01940 53.791 1.03e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g0078 None None None