Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0074 ATGGCGGCTGGAAAATCAACAAGGTCGAACCCCTCACAGGCTAGAAAGAGAGTTGATGCCGTCGATTCTCGGGCTGCTACTGGTCTCGTTCGTGCCAAAGATGGCAGTGCTTTTGCCAAATGTGAAGAGTGCAACAAGAATGTTCCAGTGGCCCTCATCAGCATGCACAGTTGTAGCCTTGATGCTAAAATTAAAATGAATCTGGAGGCCCAGGTTGTGGAAAAGCCTGCTGAAGTCAAGAAACCAGTGGAGAGGAAGAAGCCCAAGTCAAGTGAGCCTAAGGCAAAGAAGGCCAAGGTGGAGAAGGTGGAGAAGGCGGAGAAGGGCAAGGATCCTAACAAGCCCAAGCGTCCTCCTACAGCTTTCTTCGTCTTCCTGGAAGAGTTTAGAAAATCTTTCAAGGAGGCAAATCCTGATTCTAAGGATGTTAAAAGGGTTGGTAAGGAAGCAGGTGAGAAGTGGAAGTCCTTATCTGATGAGGAGAAGAAGACTTACCTGGATAGAGCTGCTGAACTCAAGGCAGAATACGAGAAAGCATTGGATAAATATAATGCTGCGGATGACGGAGCTGATCAAGAGGGATCTGATAATGAAGATGCGGCTGATGAAGTGGGTCAAGAGGAGTCTGAGAAGGACGACGCGACAAAGGAAAATGAAGAGCTCACTGATGAGGAGTAG 678 0.4794 MAAGKSTRSNPSQARKRVDAVDSRAATGLVRAKDGSAFAKCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEVKKPVERKKPKSSEPKAKKAKVEKVEKAEKGKDPNKPKRPPTAFFVFLEEFRKSFKEANPDSKDVKRVGKEAGEKWKSLSDEEKKTYLDRAAELKAEYEKALDKYNAADDGADQEGSDNEDAADEVGQEESEKDDATKENEELTDEE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0074 225 Coils Coil 162 189 - -
Lele55g0074 225 MobiDBLite consensus disorder prediction 183 225 - -
Lele55g0074 225 Pfam HMG (high mobility group) box 115 184 IPR009071 -
Lele55g0074 225 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 115 184 IPR009071 -
Lele55g0074 225 SUPERFAMILY HMG-box 108 185 IPR036910 -
Lele55g0074 225 SMART hmgende2 114 185 IPR009071 -
Lele55g0074 225 Coils Coil 197 224 - -
Lele55g0074 225 MobiDBLite consensus disorder prediction 75 115 - -
Lele55g0074 225 CDD HMGB-UBF_HMG-box 115 181 - -
Lele55g0074 225 MobiDBLite consensus disorder prediction 75 119 - -
Lele55g0074 225 MobiDBLite consensus disorder prediction 136 163 - -
Lele55g0074 225 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 14 217 - -
Lele55g0074 225 MobiDBLite consensus disorder prediction 1 21 - -
Lele55g0074 225 Gene3D High mobility group box domain 98 202 IPR036910 -
Lele55g0074 225 MobiDBLite consensus disorder prediction 191 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0074 Lele-ChrLele55 471634 473322 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele55g0074 HMG_box 4.5e-21 CL0114