Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0072 ATGAAGGAGCTGGAATGTGGTTCAATCTCCAAATCGGTGCTCCACAATTTGGATCATGTCCGTGAATTCATCAACTCGACTTGGAGAGTTTGTTCTCTGGTTGGCGGTTGGGAAAGAAAAGGTTATTCAGGTTTCATGACTCAACTGGACTCTATATATATTAGTTCATCAGATGATGACCTGCAGCTGGAGGAACCGGAAACCTCTAATTATAGGAACCTCCCAGGATGGGCTGCTGGAGGAAGCTATGGTGGAGGGCTTAAGCAGGATAGTTCTTCTAAATGGAAAAATACTTCGAATGCAAGCTCTTCAAGAGCTTATGGGCCCTATAATCACTCTCAAGTCAAGCACAGTACTAGCAACAATGTGCGGAATCACAGAGTAGCACAAAGAGATGAATCTTTCAATTTTTCAGAGAATGGAAAAACAAATCAGCATGAGACAGTCAGTTCGCGAAGTGCTAATACTGGTGCTGATTATGGAAAAAGGATCCTTCCATCATATCTTCAGCCATCTACTGAAAAGCATCTTCCACCTTCTCTCAAGTCATTTTCACCAGATACTAGGCTGAACAGTTTAAAAGATAGCATGAGCAGCAGAAGCCAGATTCATGATACCAATGGGAATCGTCATAATGGTGCGATTAGGATTCTTACCCCAACTTTGATGCATGGAAAAAACCTCACTGTTATGCAGTTACCTAGTTCGAGTGAATCTACATATCATTCTGGAGCAGTTATACCTTATACAATCATGGCTTATGACAATTTATATGCTCGCAATGACCTCAATCAACCAAAGGTGGAAGCTACTTTACCTGATGGTTTATTGTCTGTATCACTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAAATAGAAGTTTGCATTGCTTGGGAGGGATTCTGGCTGATGATCAGGTGCTTGGTAGGAAAAGAGCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTAAGCTCTCTGTGTTGGTTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCTAATTATGATGTTGTTCTCACAACATATTCTATTGTGAGTACGGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGAAAAAAATGAGGAAAAATTTCTGTTATCCTCTGAGTTTGCTTTGGGTAAAAAGAGGAAAAAGACTTATAACGCAATTAAAAAGAGTAGAAAGGGTAAAATGGGAATTGACAGTTCTGTTGATTGTGCTTCTGGCCCTCTTGCACAAGTGGGTTGGTTCAGGGTTGTTATAGATGAAGCTCAAACCATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCAGCAGCCTTCGGGCCAAAAGAAGGTGGTGTTTATCTGGCACACCGATTCAAAATACTATAGATGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGAATTCAAGTCTTTCTACAATACAATAAAGGTACCAATATCTAAAAATTCTGTCCAGGGTTACAAGAAGCTTCAAGCGGTTCTGAGGGCTATAATGCTACGTCGTACAAAAGGTGCAGTTTTTGGTGGTATCTCTGGTGGCCTTGGGGATCCTAGTTCTGCAAGTTATCGTCATGTTGATTATTCAGTAGTACAGCAGATAAATTACATTTCATCTAAAATCAAAGCAGTCCTTGTGATTCTGCAGTTATATTGTAAAGTAAAGAATCCAGGTTCTGACGGATTGAGTTCCTCAGGATGCAGTAGAGATTCATCTTTTGAAACTTCAGACGATGAAGATTTCTATTCAGAAGTTCGTCCTGCAAAATGCACAAGAAAATATTCAGAGAAGAAAAGAGAAAAATGGTGGCATCTGCTTTTGGTAAAGATCAAGGCTGGGGGGTCTCAACTCCCGCCAAGGATCGATCTTTCTGTCACATTTGGTAAATCATCAGGTAAGCTTAATAAGGAAGCTGGAACAGGAGACGTGAAAAAGTATTCAGATTTCATGGCTCAGCTAGAGTGTATATATATTAGTTCATCAGATGATGACTTGGAACTGGAGGAGATAGAAAATCCAAATTATGGAAATCGTTCTGGTTGGCCTCCTCGTGAAAGCAATGCTGGTTATGGTGGAGGGCTTACACTTGATAGTCCTTTGAGATGGGCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCAGTATCTGAGCACTATATTGAACCTGGGTTCAGCAGTTATATGCCAAATCGCAGAGTCACACATGGAGATGGATCTTTCAATGTTTTCAAGAATGGAGACACAAGTCAGTTTCAGACAGTTAATTCTCGAATTGCGAAATCTTCTGGTGCTGATTATGAGAAAATACCATCCCAACAAGCTTTGAAGAGGACCCTTTCATCGTTGCCTCTGCCAGCTGCGACAAAGCCATTTCCATCTTCTCTTCAGTCATTTGCACCAGGAAGTAGCATGAACAGCGACCAGAGCACCTTGCGTGATAACTATGGCAGGGGCAATGATGAACATGCGATTTATCATAATGGTGGGATAAGGATTCTTCCTCCATCTATGATTCATGGAAAGTCTATCTCTAACACACAGTTAGCTAGTTCAAGTGAAGCTGTATACCGTTCTGGGGCAGGGGAAGAAAGGGCCTCGGAAAACGATGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGATGGTTTATTGTCTGTGTCGCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGGTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGAATTCTGGCTGATGATCAGGGGCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGCAATTGCAGTCAAAATCGAAAGCAGATGAGATGTGCAATCATAAAGCTGAAGCATTAAATTTGGATGAAGATGATGAAAATGATAATGCTGGTGATAATGCGGAAAAATCTAAAAACGATGAAGAAGATGATATAAAACCTATTCCTGAATCAGTTAGTTCATCTTCAACAAAGGTTGTTGGCAGGAAAAGACCAGCTGCTGGTACTCTGGTTGTGTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAATTGGATGACAAAGTAGGAGATGTAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACATATTCTATTGTGACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGACGATGAAATTGATGAAAAAATGGGGGAAAAATTTGGGTTATCCTCTGAGTTTGTTTTTGGTAAAAAGAGGAAAAAGGCTTATAATGCAAGTAAAAAGAGTAAAAAAGTTAAAAAGGGAATTGACAGTTCTATTGATTGTGCATCTGGTCCACTCGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAAACCATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAACGCTATTGAAGATCTCTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCTGTTCTTAGGGCTATAATGCTACGTCGTACTAAAGGAACATTTATTGATGGACAGCCTATAATCACTCTGCCCCCTAAGACTGTTCAGCTGAATAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAATCAATTTAAGGCATACGCTGCTGCTGGCACAGTAAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGCCAGGCCTGCGACCACCCACTTCTTGTTAAAGATTATAGTTCTGATTTCGTTGGGGAAAATTCAATAGAAATGGCAAGAACGCTTCCAAAGGAGATGCTAGTTAATCTTTTCAATTGTTTGGAAGCATCCTTTGCAATTTGTAAAGTTTGCAACGATACACCAGAAGACCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAACATTTGACGGGTTATGAAAATATGTGCCCAGCTGCTGATTGTAAAGAACAAATTGGTGATGATGTTGTCTTCTCCAAAGCTACCTTAAGAAGTTGCATGTCTGGTGATCTTGGTGATAGTAGTTCTTCAGATTCACGCCTTGTTGATTATTCAGTTGTGCAGCAGAGTAATTACAGTTCATCTAAAATCAAGGCACTCCTTGAGATTCTGGAGCTACATTGCTCTGGTCGTTCTAGAAACTCACTGCCTCCTGAAACTTCGGATATTGAAAACATAGATTCAGATGTGACTGTTACAAGGGACACGAGAAAATATTCAGAGAGCACAACGAACGCACCATTAAAGGCTATCATTTTTTCCCAGTGGACGAGCATGTTGGACTTGGTCGAAGATTCACTGAAGGACACTGGCATTCGACACAGGAGACTTGATGGTACCATGACGCTGGTTGCAAGGGATAAGTCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTCCTGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTTCTGCTTGTCATGTAATTCTTTTAGATCTTTGGTGGAATCCAACAACTGAAGACCAAGCTGTGGATCGAGCTCACAGGATCGGACAGACACGGCCTGTTACTGTGACACGGCTCACTATAAGAGATACAGTTGAAGACAGAATCTTGGCTCTCCAGGAAGACAAGAGAAAAATGGTCGCATCTGCTTTCGGTGAAGATCAAGCCGGCGGGACGGCGACTCGCCTAACAGTGGATGACCTAAAATATCTGTTCATGGTCTGA 5046 0.4124 MKELECGSISKSVLHNLDHVREFINSTWRVCSLVGGWERKGYSGFMTQLDSIYISSSDDDLQLEEPETSNYRNLPGWAAGGSYGGGLKQDSSSKWKNTSNASSSRAYGPYNHSQVKHSTSNNVRNHRVAQRDESFNFSENGKTNQHETVSSRSANTGADYGKRILPSYLQPSTEKHLPPSLKSFSPDTRLNSLKDSMSSRSQIHDTNGNRHNGAIRILTPTLMHGKNLTVMQLPSSSESTYHSGAVIPYTIMAYDNLYARNDLNQPKVEATLPDGLLSVSLMRHQKIALAWMLQKENRSLHCLGGILADDQVLGRKRAAAGTLVVCPASVLRQWARELEDKVGDEAKLSVLVYHGGNRTKDPVELANYDVVLTTYSIVSTEVPKQPLVEEDEIDEKNEEKFLLSSEFALGKKRKKTYNAIKKSRKGKMGIDSSVDCASGPLAQVGWFRVVIDEAQTIKNHRTQVARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAEFKSFYNTIKVPISKNSVQGYKKLQAVLRAIMLRRTKGAVFGGISGGLGDPSSASYRHVDYSVVQQINYISSKIKAVLVILQLYCKVKNPGSDGLSSSGCSRDSSFETSDDEDFYSEVRPAKCTRKYSEKKREKWWHLLLVKIKAGGSQLPPRIDLSVTFGKSSGKLNKEAGTGDVKKYSDFMAQLECIYISSSDDDLELEEIENPNYGNRSGWPPRESNAGYGGGLTLDSPLRWANTSNASSSGAYNHSVSEHYIEPGFSSYMPNRRVTHGDGSFNVFKNGDTSQFQTVNSRIAKSSGADYEKIPSQQALKRTLSSLPLPAATKPFPSSLQSFAPGSSMNSDQSTLRDNYGRGNDEHAIYHNGGIRILPPSMIHGKSISNTQLASSSEAVYRSGAGEERASENDERLIYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQGLGKTISMIALIQMQRQLQSKSKADEMCNHKAEALNLDEDDENDNAGDNAEKSKNDEEDDIKPIPESVSSSSTKVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDVAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEDDEIDEKMGEKFGLSSEFVFGKKRKKAYNASKKSKKVKKGIDSSIDCASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTFIDGQPIITLPPKTVQLNKVDFSIEERAFYTKLEADSRNQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGENSIEMARTLPKEMLVNLFNCLEASFAICKVCNDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPAADCKEQIGDDVVFSKATLRSCMSGDLGDSSSSDSRLVDYSVVQQSNYSSSKIKALLEILELHCSGRSRNSLPPETSDIENIDSDVTVTRDTRKYSESTTNAPLKAIIFSQWTSMLDLVEDSLKDTGIRHRRLDGTMTLVARDKSVKDFNTDPEVTVLLMSLKAGNLGLNLVSACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILALQEDKRKMVASAFGEDQAGGTATRLTVDDLKYLFMV 1681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0072 1681 MobiDBLite consensus disorder prediction 1003 1045 - -
Lele55g0072 1681 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1152 1283 - -
Lele55g0072 1681 Gene3D - 1286 1680 IPR027417 -
Lele55g0072 1681 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 802 1680 - -
Lele55g0072 1681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 1271 IPR027417 -
Lele55g0072 1681 SUPERFAMILY RING/U-box 1384 1424 - -
Lele55g0072 1681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1280 1680 IPR027417 -
Lele55g0072 1681 MobiDBLite consensus disorder prediction 86 125 - -
Lele55g0072 1681 CDD SF2_C_SNF 1528 1633 - -
Lele55g0072 1681 MobiDBLite consensus disorder prediction 1016 1033 - -
Lele55g0072 1681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1510 1676 IPR001650 -
Lele55g0072 1681 SMART ring_2 1387 1425 IPR001841 -
Lele55g0072 1681 Gene3D - 1036 1127 IPR038718 -
Lele55g0072 1681 Pfam Helicase conserved C-terminal domain 1526 1623 IPR001650 -
Lele55g0072 1681 MobiDBLite consensus disorder prediction 134 157 - -
Lele55g0072 1681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 321 501 IPR014001 -
Lele55g0072 1681 Gene3D - 908 1001 IPR038718 -
Lele55g0072 1681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 954 1233 IPR014001 -
Lele55g0072 1681 Gene3D - 251 391 IPR038718 -
Lele55g0072 1681 Gene3D - 392 549 IPR038718 -
Lele55g0072 1681 Gene3D - 1131 1282 IPR038718 -
Lele55g0072 1681 Pfam SNF2-related domain 946 1348 IPR000330 GO:0005524|GO:0140658
Lele55g0072 1681 SMART ultradead3 277 516 IPR014001 -
Lele55g0072 1681 SMART ultradead3 935 1250 IPR014001 -
Lele55g0072 1681 ProSitePatterns Zinc finger RING-type signature. 1402 1411 IPR017907 -
Lele55g0072 1681 SMART helicmild6 1540 1623 IPR001650 -
Lele55g0072 1681 CDD DEXDc_SHPRH-like 939 1271 - -
Lele55g0072 1681 Pfam Zinc finger, C3HC4 type (RING finger) 1387 1423 - -
Lele55g0072 1681 Pfam SNF2-related domain 284 552 IPR000330 GO:0005524|GO:0140658
Lele55g0072 1681 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 420 549 - -
Lele55g0072 1681 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 306 391 - -
Lele55g0072 1681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 539 IPR027417 -
Lele55g0072 1681 MobiDBLite consensus disorder prediction 83 159 - -
Lele55g0072 1681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1381 1437 IPR013083 -
Lele55g0072 1681 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1034 1123 - -
Lele55g0072 1681 CDD DEXDc_SHPRH-like 281 539 - -
Lele55g0072 1681 ProSiteProfiles Zinc finger RING-type profile. 1387 1423 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0072 Lele-ChrLele55 441139 456024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0072 313 574 RAD5 or RAD16-like Gene Family AT1G50410 69.318 9.57e-109 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele55g0072 SNF2_N 5.5e-67 CL0023