LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g0053	ATGGCCGAGTCACCCTCTCCGACGCCTGAGCAACCCTTGCCGGAATCCGATTATTCCCAGTACTGGTGCTACCACTGCGACAAGCGTGTGTCCGTAGAAACGCATCCTGAGGGCCCTGACATTCTCTGCCGCGAGTGCAAGCATGGGTTCGTCGAATCGATTCCTTCGCCTTCTTTGGCTCCGCCCTCTACGACTTCTGATCTGATCGACGATCCTCATTTTGAATCACAATTTCTCCGCGTACTTCGGCTACTTGCAGAGTCGGCGCGTGATGAAGACGCGCCTCATCCTCCGTCTCGAAACCGCTCCTCAGGCGATGATTTTGTCAGGGTTGAGCTCGAGGATTGGGATGACGATGAAGAAAGCAGCAACAACAATAACGACGAGGACGGTGAAGATGTTGGGGTGGAGTTTCACGATGAAGGAGAAGAACACGAAGGTGCTGAAGAGCATGAAGACGGGCTAGGAATAGAGGACCTAAGTGGAGACGAAGCTGAAGAAGATCTGAGAAGGAGGAGTATGAGGAACCGGATCAGAGACTTGACCAGTCGGATCAGAGATTTGGCCACCGGCACGAGGAGCAGGAGGAACAGGATCTTGGATTGGGCGGATATACTGATGGGTCTTGAAGACAATTCCATTGAACTGAGACTTCAGGTGCCTGATTCTGATCGATTTTTCGGGAATCCGGGAGATTACGTCGATGCTGCTGATTATGAAGGTCTGCTGCTGACCTTGGCAGAAAGCGATGGAAGCGGGAGAAGAGGGGCTCCGCCGGCGGCAAAATCTGCGGTGGAGTCGCTGCCGACGGTGGATATTGTGTCAGAGGATCAAGCTTTGGTGTGCGCTATATGCAAAGATATAGTGGGTGTTGGAAGCATGGCAAAGCGATTGCCCTGTGGACATCAGTACCACAGGGATTGCATAGTTCCCTGGTTGGGCTCCAGAAATTCATGCCCAGTGTGCAGGTTTGAGCTTCCGACGGATGACCAGGATTATGAGGAGGAAAAGAAGAAGAAGGTGATTCCCACTACTGCTAATGGGGCATCGGGTTCTGGTGGAACCGATGCGGTATCGGGTTTATTCTAA	1089	0.5253	MAESPSPTPEQPLPESDYSQYWCYHCDKRVSVETHPEGPDILCRECKHGFVESIPSPSLAPPSTTSDLIDDPHFESQFLRVLRLLAESARDEDAPHPPSRNRSSGDDFVRVELEDWDDDEESSNNNNDEDGEDVGVEFHDEGEEHEGAEEHEDGLGIEDLSGDEAEEDLRRRSMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEGLLLTLAESDGSGRRGAPPAAKSAVESLPTVDIVSEDQALVCAICKDIVGVGSMAKRLPCGHQYHRDCIVPWLGSRNSCPVCRFELPTDDQDYEEEKKKKVIPTTANGASGSGGTDAVSGLF	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g0053	362	Pfam	Ring finger domain	282	323	IPR001841	-
	Lele55g0053	362	Pfam	zinc-ribbon	20	54	IPR039525	GO:0061630
	Lele55g0053	362	SUPERFAMILY	RING/U-box	277	329	-	-
	Lele55g0053	362	MobiDBLite	consensus disorder prediction	89	108	-	-
	Lele55g0053	362	MobiDBLite	consensus disorder prediction	138	155	-	-
	Lele55g0053	362	MobiDBLite	consensus disorder prediction	340	362	-	-
	Lele55g0053	362	MobiDBLite	consensus disorder prediction	115	166	-	-
	Lele55g0053	362	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	148	327	-	-
	Lele55g0053	362	SMART	ring_2	282	322	IPR001841	-
	Lele55g0053	362	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	248	329	IPR013083	-
	Lele55g0053	362	ProSiteProfiles	Zinc finger RING-type profile.	282	323	IPR001841	-
	Lele55g0053	362	MobiDBLite	consensus disorder prediction	115	137	-	-
	Lele55g0053	362	FunFam	E3 ubiquitin-protein ligase RING1-like	245	329	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g0053	Lele-ChrLele55	360367	361455	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g0053	193	341	C3H Transcription Factor Family	AT5G01980	48.077	3.75e-36	135