Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0045 ATGTCTTCCTCCGGTGGAATCGATCATGACCGCGGAACAAAACCTTTTTTCTGCTACAAATGCGATCGCAGAGTCAATATTCCCTCCTCCGATTCTTCCGACCCTTTCTGTCCATTCTGCTTTCAAGGCTTTCTTGAAGAAGTCGAAAACCCTAACCCTAACCCTTTTGCAGACCCAGAGCCCTCTTTTGGCTTTGATCCTCTATCCTTCCTTCCCCTTCTCTTGTCTACTGCTTCTCGCTCCAGGATTCGACCAGATTCCGTTGATGCTGACATATTCGACCCTGTTCATTTTCTCCAGAACCACCTTCGAGATCTTCAGTCTGATGGCGCGAACGTCCAATTCGAGATCAATCATCCTCAGGAACAAGCGTTTCGGCTACCCAGGAACATTGGCGATTACTTTCTTGGTCCTGGCCTGGAGCAATTGATACAGCAGCTCGCAGAGAACGACCCAAACCGTTATGGCACCCCGCCTGCCTCCAAATCTGCTGTACAGAACCTTCCAACTGTTACTGTCACCGATGAATTGTTGAACTCGGAAATGAACCAGTGTGCGGTATGTCAGGATGAGTTCGAGAAGGGTACCCAGGTAAAGCAAATGCCTTGCAAGCATGTGTATCATGATGAGTGCCTGCTTCCTTGGCTCGAACTGCATAACTCTTGCCCGGTATGTCGATATGAGTTGCCCACCGATGACCCCGATTATGAGGACCCAGCCCTCCGGGCCCATGGGAATGCTAATGCGGGGTGGAGGCCTGTTGGCAATGCCAGCAGCAGCGGAGGGGCTAACAGACCCGTTCAGAGGACTTTTAGGATATCGTTACGGTATCCATTTGGTTCACGCGAGTCTACTCAAGAGAGTAGCGAACGAGGGTGGGGAAATATGCAAGAAGATTTGGATTGA 906 0.5033 MSSSGGIDHDRGTKPFFCYKCDRRVNIPSSDSSDPFCPFCFQGFLEEVENPNPNPFADPEPSFGFDPLSFLPLLLSTASRSRIRPDSVDADIFDPVHFLQNHLRDLQSDGANVQFEINHPQEQAFRLPRNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAVQNLPTVTVTDELLNSEMNQCAVCQDEFEKGTQVKQMPCKHVYHDECLLPWLELHNSCPVCRYELPTDDPDYEDPALRAHGNANAGWRPVGNASSSGGANRPVQRTFRISLRYPFGSRESTQESSERGWGNMQEDLD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0045 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 232 IPR013083 -
Lele55g0045 301 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Lele55g0045 301 SUPERFAMILY RING/U-box 164 235 - -
Lele55g0045 301 SMART ring_2 185 225 IPR001841 -
Lele55g0045 301 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Lele55g0045 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 230 - -
Lele55g0045 301 MobiDBLite consensus disorder prediction 280 301 - -
Lele55g0045 301 CDD RING-H2_RNF126_like 184 226 - -
Lele55g0045 301 Pfam Ring finger domain 183 226 IPR001841 -
Lele55g0045 301 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0045 Lele-ChrLele55 318781 319686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0045 130 238 C3H Transcription Factor Family AT5G01980 49.541 2.92e-33 125