Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0023 ATGATTGGTATCGAGAATTCATCTACTCTCCTCTTGTGCTTCGATGTTCTTTTCATCATATTCTGTATTTCGACATTTATTTGAAAGAGAGAGGCTGAAGATGAACCTGAGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGTTTCTGAAAATCAAGAGAAGGAAAGTAGTGCAGATGATTCCTTTCCAAATTCTGGAAACTCAGATGAAGATTCTGGTTTGAATGATGATATACAAACAGAGTCAACCATCTTGCCTGAGAAATTACCTGATGCTGGTAACAAAGAACCTGCTCAGAAAGTTGATTCAAGTAAAGCATCGGGTTTAGATTCTGACGGCAGAACTGATGTGGATATGGACAACGTAACCGCTTCATCGAAGAAGTTGCTTGCTACTTCTGCTGCAGGTGATAATATATCTACTAAGAAGATTGAGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGATGATGATGTCCAGAAAACACATGTAATATCATCAAGAGAAGGATTTGATGAATGCAATTTATTGAAGAATCAGCTGAGGAAATTGCATCCCAGTGATAATCTTATTTCACTGAATGAGGTGAAAGATGATGAAATGGTTGATACTACCTCAACAGGGGCAACTAGAAAGGAAATTCCTAAAACAGCGTTTACACCAGAAATAAAAAATGCCACATCAAAAAAAATATTTGTTGGGAACTTATCATATGAGGTGAAAAGGGCCAATTTGGAAAATTTATTTAAGAGTTGTGGAGAAATTGTTGAGGTCTCTTTTGGTTTATATCGTGATGGGACGTTTAGAGGCTTTGCTCATGTTGAGTTTTCCACTGAAGAAGCTGCACAAAATCCTACAACGTCAGCTACCACAAAAGAACAAAATCCCATATCGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGTGGAAAGGGCTGATTTGTATGTATTATTTCCTGTGCAAATGCTTCACATATATTTCTCTGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAAACAGTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCCAGAAGCAGCACAAAATGCTCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAGGCTTGATCTGGCTGAAGAAAAGATTGTGCATTCTTCCAATAGCAGGTATGCTTGGTTAGACTTCATGGATGTTGATGGCTTCAATAAAGCACTTGAACTTGATGGAACTGAGGTTGGAGGTTATGTATTGTCGGTGGAGAAAAGAAGACCTCGGCATAATATTCAAGATGGTAGAGGTGGTGGCGATCAATTAGGAGGATGGCGTGGTGGCGATCAATTTGGTGGATGCCGTGGAGGTGGCCAATGGGATCGTAGAAGAGGTTATGGCAGGAGGTGGCATTGA 1536 0.3919 MIGIENSSTLLLCFDVLFIIFCISTFIXKREAEDEPEKQVTAKKQKRDWVSENQEKESSADDSFPNSGNSDEDSGLNDDIQTESTILPEKLPDAGNKEPAQKVDSSKASGLDSDGRTDVDMDNVTASSKKLLATSAAGDNISTKKIESSNDSSLDSGLDDDDVQKTHVISSREGFDECNLLKNQLRKLHPSDNLISLNEVKDDEMVDTTSTGATRKEIPKTAFTPEIKNATSKKIFVGNLSYEVKRANLENLFKSCGEIVEVSFGLYRDGTFRGFAHVEFSTEEAAQNPTTSATTKEQNPISKMLFVGNLSYSVERADLYVLFPVQMLHIYFSAKMPAAPKEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHVEFATPEAAQNALKLNGNELLRQYIRLDLAEEKIVHSSNSRYAWLDFMDVDGFNKALELDGTEVGGYVLSVEKRRPRHNIQDGRGGGDQLGGWRGGDQFGGCRGGGQWDRRRGYGRRWH 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0023 511 SMART rrm1_1 234 308 IPR000504 GO:0003723
Lele55g0023 511 SMART rrm1_1 349 420 IPR000504 GO:0003723
Lele55g0023 511 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 34 288 - -
Lele55g0023 511 MobiDBLite consensus disorder prediction 34 59 - -
Lele55g0023 511 MobiDBLite consensus disorder prediction 60 84 - -
Lele55g0023 511 CDD RRM1_NUCLs 349 425 IPR034349 -
Lele55g0023 511 SUPERFAMILY RNA-binding domain, RBD 232 323 IPR035979 GO:0003676
Lele55g0023 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 424 IPR000504 GO:0003723
Lele55g0023 511 SUPERFAMILY RNA-binding domain, RBD 431 498 IPR035979 GO:0003676
Lele55g0023 511 Gene3D - 186 290 IPR012677 -
Lele55g0023 511 Gene3D - 333 432 IPR012677 -
Lele55g0023 511 MobiDBLite consensus disorder prediction 34 122 - -
Lele55g0023 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 417 IPR000504 GO:0003723
Lele55g0023 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 287 IPR000504 GO:0003723
Lele55g0023 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 319 IPR000504 GO:0003723
Lele55g0023 511 SUPERFAMILY RNA-binding domain, RBD 338 428 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0023 Lele-ChrLele55 188642 194931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0023 235 425 Eukaryotic Initiation Factors Gene Family AT2G36660 28.866 3.10e-12 67.0