Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele55g0023 | ATGATTGGTATCGAGAATTCATCTACTCTCCTCTTGTGCTTCGATGTTCTTTTCATCATATTCTGTATTTCGACATTTATTTGAAAGAGAGAGGCTGAAGATGAACCTGAGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGTTTCTGAAAATCAAGAGAAGGAAAGTAGTGCAGATGATTCCTTTCCAAATTCTGGAAACTCAGATGAAGATTCTGGTTTGAATGATGATATACAAACAGAGTCAACCATCTTGCCTGAGAAATTACCTGATGCTGGTAACAAAGAACCTGCTCAGAAAGTTGATTCAAGTAAAGCATCGGGTTTAGATTCTGACGGCAGAACTGATGTGGATATGGACAACGTAACCGCTTCATCGAAGAAGTTGCTTGCTACTTCTGCTGCAGGTGATAATATATCTACTAAGAAGATTGAGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGATGATGATGTCCAGAAAACACATGTAATATCATCAAGAGAAGGATTTGATGAATGCAATTTATTGAAGAATCAGCTGAGGAAATTGCATCCCAGTGATAATCTTATTTCACTGAATGAGGTGAAAGATGATGAAATGGTTGATACTACCTCAACAGGGGCAACTAGAAAGGAAATTCCTAAAACAGCGTTTACACCAGAAATAAAAAATGCCACATCAAAAAAAATATTTGTTGGGAACTTATCATATGAGGTGAAAAGGGCCAATTTGGAAAATTTATTTAAGAGTTGTGGAGAAATTGTTGAGGTCTCTTTTGGTTTATATCGTGATGGGACGTTTAGAGGCTTTGCTCATGTTGAGTTTTCCACTGAAGAAGCTGCACAAAATCCTACAACGTCAGCTACCACAAAAGAACAAAATCCCATATCGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGTGGAAAGGGCTGATTTGTATGTATTATTTCCTGTGCAAATGCTTCACATATATTTCTCTGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAAACAGTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCCAGAAGCAGCACAAAATGCTCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAGGCTTGATCTGGCTGAAGAAAAGATTGTGCATTCTTCCAATAGCAGGTATGCTTGGTTAGACTTCATGGATGTTGATGGCTTCAATAAAGCACTTGAACTTGATGGAACTGAGGTTGGAGGTTATGTATTGTCGGTGGAGAAAAGAAGACCTCGGCATAATATTCAAGATGGTAGAGGTGGTGGCGATCAATTAGGAGGATGGCGTGGTGGCGATCAATTTGGTGGATGCCGTGGAGGTGGCCAATGGGATCGTAGAAGAGGTTATGGCAGGAGGTGGCATTGA | 1536 | 0.3919 | MIGIENSSTLLLCFDVLFIIFCISTFIXKREAEDEPEKQVTAKKQKRDWVSENQEKESSADDSFPNSGNSDEDSGLNDDIQTESTILPEKLPDAGNKEPAQKVDSSKASGLDSDGRTDVDMDNVTASSKKLLATSAAGDNISTKKIESSNDSSLDSGLDDDDVQKTHVISSREGFDECNLLKNQLRKLHPSDNLISLNEVKDDEMVDTTSTGATRKEIPKTAFTPEIKNATSKKIFVGNLSYEVKRANLENLFKSCGEIVEVSFGLYRDGTFRGFAHVEFSTEEAAQNPTTSATTKEQNPISKMLFVGNLSYSVERADLYVLFPVQMLHIYFSAKMPAAPKEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHVEFATPEAAQNALKLNGNELLRQYIRLDLAEEKIVHSSNSRYAWLDFMDVDGFNKALELDGTEVGGYVLSVEKRRPRHNIQDGRGGGDQLGGWRGGDQFGGCRGGGQWDRRRGYGRRWH | 511 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele55g0023 | 511 | SMART | rrm1_1 | 234 | 308 | IPR000504 | GO:0003723 | |
Lele55g0023 | 511 | SMART | rrm1_1 | 349 | 420 | IPR000504 | GO:0003723 | |
Lele55g0023 | 511 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 34 | 288 | - | - | |
Lele55g0023 | 511 | MobiDBLite | consensus disorder prediction | 34 | 59 | - | - | |
Lele55g0023 | 511 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
Lele55g0023 | 511 | CDD | RRM1_NUCLs | 349 | 425 | IPR034349 | - | |
Lele55g0023 | 511 | SUPERFAMILY | RNA-binding domain, RBD | 232 | 323 | IPR035979 | GO:0003676 | |
Lele55g0023 | 511 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 348 | 424 | IPR000504 | GO:0003723 | |
Lele55g0023 | 511 | SUPERFAMILY | RNA-binding domain, RBD | 431 | 498 | IPR035979 | GO:0003676 | |
Lele55g0023 | 511 | Gene3D | - | 186 | 290 | IPR012677 | - | |
Lele55g0023 | 511 | Gene3D | - | 333 | 432 | IPR012677 | - | |
Lele55g0023 | 511 | MobiDBLite | consensus disorder prediction | 34 | 122 | - | - | |
Lele55g0023 | 511 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 350 | 417 | IPR000504 | GO:0003723 | |
Lele55g0023 | 511 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 235 | 287 | IPR000504 | GO:0003723 | |
Lele55g0023 | 511 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 233 | 319 | IPR000504 | GO:0003723 | |
Lele55g0023 | 511 | SUPERFAMILY | RNA-binding domain, RBD | 338 | 428 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele55g0023 | Lele-ChrLele55 | 188642 | 194931 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele55g0023 | 235 | 425 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 28.866 | 3.10e-12 | 67.0 |