Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1440 ATGTCACGTCAGACTCCCACCTCCGCCTTTCTTAAATCCAAGACCCTCGACAATAAATATATGCTTGGAGATGAGATAGGGAAGGGAGCATATGGTCGAGTTTACAAAGGTTTGGACCTAGAAAATGGAGACTTTGTTGCAATTAAGCAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGAATTTGAACCATAAAAACATTGTAAAATATCTTGGATCCTTAAAGACAAAGACTCATCTTCACATTATTCTTGAGTATGTGGAAAATGGTTCACTTGCTAATATTATCAAGCCAAATAAATTTGGACCCTTTCCAGAATCATTGGTTGCTGTTTATATTGCTCAGGTACTGGAAGGCTTGGTTTACCTACACGAACAGGGTGTTATCCATCGGGATATCAAGGGTGCAAACATATTGACAACCAAAGAGGGTCTAGTCAAACTAGCTGATTTTGGTGTTGCAACAAAGTTGACTGAGGCTGATGTTAATACTCATTCAGTTGTGGGAACTCCATATTGGATGGCTCCAGAGGTTATAGAAATGTCTGGGGTTTGTGCTGCTTCTGACATTTGGAGTGTTGGCTGTACTGTTATTGAACTTCTTACATGTGTGCCACCATATTATGATCTACAGCCTATGCCAGCTCTCTTTCGTATTGTTCAGGATGAGCATCCTCCAATTCCTGATAGCCTGTCTCCTGATATCACTGATTTTCTGCGTCAATGCTTTAAGAAGGTAAGTGTTTTTTATCTTATAGGTTTGTTGGTGTTTCTTTATGTGCGCGCTGCACGGGATTGGTATCTTGTGCTTGGAAAATCTGCATTATAG 843 0.4009 MSRQTPTSAFLKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLRQCFKKVSVFYLIGLLVFLYVRAARDWYLVLGKSAL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1440 280 CDD STKc_Cdc7_like 19 250 - -
Lele54g1440 280 PRINTS Tyrosine kinase catalytic domain signature 89 102 IPR001245 GO:0004672|GO:0006468
Lele54g1440 280 PRINTS Tyrosine kinase catalytic domain signature 174 184 IPR001245 GO:0004672|GO:0006468
Lele54g1440 280 PRINTS Tyrosine kinase catalytic domain signature 127 145 IPR001245 GO:0004672|GO:0006468
Lele54g1440 280 PRINTS Tyrosine kinase catalytic domain signature 193 215 IPR001245 GO:0004672|GO:0006468
Lele54g1440 280 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Lele54g1440 280 SMART serkin_6 20 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1440 280 Pfam Protein kinase domain 21 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1440 280 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1440 280 FunFam MAP3K epsilon protein kinase 1 17 256 - -
Lele54g1440 280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Lele54g1440 280 Gene3D Transferase(Phosphotransferase) domain 1 17 252 - -
Lele54g1440 280 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 15 250 - -
Lele54g1440 280 SUPERFAMILY Protein kinase-like (PK-like) 10 250 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1440 Lele-ChrLele54 19024818 19030571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1440 1 252 MAP Kinase Kinase Kinase AT3G13530 92.278 5.70e-167 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Lele54g1440 Pkinase 5.9e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1440 54 19024818 19030571 Lele54g1440 54 19024818 19030571 ECH