Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1434 ATGAGCTTCTACGCGTGGATGCTGTTTGTGCCTCTTTGGCTCACATTCTCCTACACATTCACAGCTTTCAGCATCTGGTGTCCTGACGCGGTTCTCTCCAAGATGGGCTTAATAGATTACTCTGGAGGATACGTCATTCATCTCTCTTCTGGGGTCGCTGGATTCACCGCAGCATATTGGGTTGGTCCGAGGCTGAACAAGGACAGAGAAAGGTTCCCTCCAAACAACATACTGCTGATGTTGGCGGGAGCGGGATTATTGTGGATGGGATGGACGGGCTTCAACGGAGGAGACCCTTACTCGGTGAGCATGGACGCCTCCTTGGCCGTGTTGAACACACATGCATGCACCGCCACCAGCTTGCTCACCGGGGTCGTCCTCGACGTCATCTTCTTCCGTAAGCCCTCTGTGATCGGCGCAGTTCAGGGCATGATCACTGGCTTGGTCTGCATCACTCCTGCTGCAGGTGTTGTGCAGGGATGGGCCGCCATATTCATGGGGTTGTGCTCTGGCTCCATTCCTTGGGTGACAATGATGGTCGTCCACAAGAGATACAAGCTGCTTCAGAAGGTTGACGACACCATGGCTGTGTTTCACACCCACGCCGTCGCCGGATCTCTGGGAGGGATCCTCTCCGGCCTCTTCGCAGAGCCCAAGCTCAACTTTCTGTTCTATGGCGCCTACAACAAATATGTGGGCCTCTTCTACGGTCTCCAAATGAAAGACGCCAGAACTGGGTTGCGACAGATCGGGGTCCAACTCCTGGGGATATTGTTTGTGACGCTGCTCAATGTGATTGTCACGAGTTTGATATGTCTGTTTATTCGACTGTTGATGCCTTTAAGGATGTCTGAAGATGATATGGAGGTAGGGGACGAGGCTGCTCACGGGGAAGAAGCATATGCTATTGGTGGACAAGGTGATAAGCTTGACACTTTGGTTTCCAAATATGGGAGTTCCCTCAGCAAATCAAATCATGCATTTCTTAAAGATAAACATAAATCAACCCCAGAACTGAATAAAGCTCATCTGTACTCTCTGGCTGAGCCTTCAGCAACAACACTCTCCCGCCGTAGGATCAGCGATGGAGCATATGGTGTCGACTGTGGAGAATCCGTCGGGGTCGGCGGAGGCAATAAGGAGGTCACCGGCAGTGACAGGAGGCGTGGTCATGTCGAGGACAAAGTGATTGGAGAGGCCGAGATGGGCGAGGCGCTTGCAGAGGGCTTTGAGCATGAGGCCCTTGCGGCCGACGCGGCGACACCGTAG 1269 0.5311 MSFYAWMLFVPLWLTFSYTFTAFSIWCPDAVLSKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVSMDASLAVLNTHACTATSLLTGVVLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIFMGLCSGSIPWVTMMVVHKRYKLLQKVDDTMAVFHTHAVAGSLGGILSGLFAEPKLNFLFYGAYNKYVGLFYGLQMKDARTGLRQIGVQLLGILFVTLLNVIVTSLICLFIRLLMPLRMSEDDMEVGDEAAHGEEAYAIGGQGDKLDTLVSKYGSSLSKSNHAFLKDKHKSTPELNKAHLYSLAEPSATTLSRRRISDGAYGVDCGESVGVGGGNKEVTGSDRRRGHVEDKVIGEAEMGEALAEGFEHEALAADAATP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1434 422 MobiDBLite consensus disorder prediction 375 394 - -
Lele54g1434 422 ProSitePatterns Ammonium transporters signature. 39 64 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lele54g1434 422 Pfam Ammonium Transporter Family 1 301 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lele54g1434 422 Gene3D Ammonium transporter AmtB like domains 1 304 IPR029020 -
Lele54g1434 422 PANTHER AMMONIUM TRANSPORTER MEP2 1 311 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele54g1434 422 SUPERFAMILY Ammonium transporter 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1434 Lele-ChrLele54 18979161 18981524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1434 1 338 Inorganic Solute Cotransporters AT2G38290 56.805 1.45e-123 360
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1434 54 18979161 18981524 Lele55g0022 55 183842 185370 hybridization
Lele54g1434 54 18979161 18981524 Lele56g0021 56 605276 606778 hybridization