Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1433 ATGAAACAAGGAAAAAGAACCCGTAGGGGTGATTATACAATCCCATATTTAGATTTAGGCAACAGTTTGCCAAATCATTCGGCACTGCAAATCTTCACTACCTGGCGACAGACTGGTATCAAAGACTTGGTCCGGTACACCACAAATGCTGCAGATAATATACCGAATAGCCATGAAAGTACAGAAAGAAATTCAACGGCTAGAAAGCATAACGCTGGAAGAGAAGGTTGGTTGTTACCTTTTGGCAACGATAAGAGCCAATGTGGAAAGAAAAGTGAGAGTTGGGCCTTGCGTGTAGAGAGTAATGGATTATCCAAGTTGGCTATCCTCGTTCCTGTCAAGAATTTGTTGAACAGAAGAAGATCCAGAGCATGGAGAGGTTTTGAGGGAGAAAGAGCAGAGCGTGAGGGTTGTGGGATCGATGAGAACGATGCAGAGCCAAGGACCCTGCCCTATGATGATGTCTTGGAAGTTGGAACTCACATTTCCAATGTATTCTATGGTGGTAGACAGGCATGGGCTCCTTTTGACGCTGCTGTTGCTGGAGTCTCGCCATCGGAGTCTGCCATGATTGGAAAGAGAGAGGCTGAAGATGAACCTGAAAAGCAAGTGAGTGCAAAGAAACAGAAGAGTGACTGGGTTGCTGAAAATCAGAAGAAGGAAAGCAGTGCAGATGATTCCTTTCCAGATTCTGGTTTGGATGATGATATAAAAACAGAGTCAACCATCTTGCCTGAGAAATTACCTGATGCTGTTGATTCAAGTAAAGCATCAGGCTTAGATTCTGACAGCAGAACTGATGGGGATATGGACAATGTAACCGCTTCATCGAAGAAGTTGCTTGCTACTTCTGCTGCAGGTGATAATATATCTACTGAGAAGGTTGAGTCTGGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGATGATGTCCAGAAAACAGATGTAACATCACCATCAAGAGAAGGATTTGATGAATGCAATGTTTACATAAATAATCTATATGGAAGATCACAGGTGAAAGATGATGAAATGGTTGATGCTACCTCAACAGGAGCAACTAGAGAGGAAGTTCCTAAAACAGTGTTTACTCCAGAAAAACAGAATGCCACATCAAAAAAAGTATTTGTTGGGAACTTATCGTATGAGGTGAAAAGGGCCAATTTGGAAAATTTATTTAAGAGTTGTGGAGAAATTGTTGAGGTCTCTTTTGGTTTATATCGTGATGGGACATTTAGAGGCTTTGCTCATGTTGAGTTTTCCACTGAAGAAGCTGCACAAAATCCTACAATGTCAGCTACCTCAAAAGAACAAAATGCCACATCGAAGATGCTATTTGTTGGAAACTTGTCATATAGTGTGGAAAGGGCTGATTTGGAAAATTTATTTAATGATTGTGGAGAAATTGTTGATATTCGATTTGCAATAGATCGTGAAGGGAGGTTTAAAGGCTTTGCACATGTCTTGTTTGCCACAGAAGAAGCAGCACAAATTGAGGATATATCATTAGGAGGAAATGAGGCTAAAATACCAGCTGCTCCAAAAGAACAAAATGCCACGTCAAAGACAGTGTTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCCAGAAGCAGCACAAAATGCTCTTAAGTTGAATGGAAACGAACTGTTGAGACAAAATATAAGGCTTGATCTGGCTGGAGAAAAGATTGTGCATTCTTCCAATAGCAGTGACGACCCCAGAAGTGTTGAGTCTCAAACAGTGTTTATAAGGGGTTTTGATACATATTTAAGAGAAGACGAGATAAGGACTAGCCTGAAAGAGCATTTCAGTTCTTGTGGAATAATTTTGAAGATATCAATTGCAAGAGATTATGGCTCCGGTTCTACTAAGGGGTATGCTTGGTTAGACTTCATGGATGTTGATGGCTTCAATAAAGCACTAGAACTTGATGGAACTGAGGTTGGAGGTTATGTATTGTCAGTGGAGAAAAGAAGACCTCGGCGTAATATTCAAGATGGTAGAGGTGGTGGCGATCAGTTTGGTGGATGGCATGGAGGGGGCCAGTGGGACCGTGGAAAAGGTTACGGCAAGAGGTGGCATTCCATACAATGA 2208 0.4139 MKQGKRTRRGDYTIPYLDLGNSLPNHSALQIFTTWRQTGIKDLVRYTTNAADNIPNSHESTERNSTARKHNAGREGWLLPFGNDKSQCGKKSESWALRVESNGLSKLAILVPVKNLLNRRRSRAWRGFEGERAEREGCGIDENDAEPRTLPYDDVLEVGTHISNVFYGGRQAWAPFDAAVAGVSPSESAMIGKREAEDEPEKQVSAKKQKSDWVAENQKKESSADDSFPDSGLDDDIKTESTILPEKLPDAVDSSKASGLDSDSRTDGDMDNVTASSKKLLATSAAGDNISTEKVESGNDSSLDSGLDEDDVQKTDVTSPSREGFDECNVYINNLYGRSQVKDDEMVDATSTGATREEVPKTVFTPEKQNATSKKVFVGNLSYEVKRANLENLFKSCGEIVEVSFGLYRDGTFRGFAHVEFSTEEAAQNPTMSATSKEQNATSKMLFVGNLSYSVERADLENLFNDCGEIVDIRFAIDREGRFKGFAHVLFATEEAAQIEDISLGGNEAKIPAAPKEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHVEFATPEAAQNALKLNGNELLRQNIRLDLAGEKIVHSSNSSDDPRSVESQTVFIRGFDTYLREDEIRTSLKEHFSSCGIILKISIARDYGSGSTKGYAWLDFMDVDGFNKALELDGTEVGGYVLSVEKRRPRRNIQDGRGGGDQFGGWHGGGQWDRGKGYGKRWHSIQ 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1433 735 MobiDBLite consensus disorder prediction 191 243 - -
Lele54g1433 735 SUPERFAMILY RNA-binding domain, RBD 515 601 IPR035979 GO:0003676
Lele54g1433 735 Gene3D - 503 602 IPR012677 -
Lele54g1433 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 444 516 IPR000504 GO:0003723
Lele54g1433 735 SUPERFAMILY RNA-binding domain, RBD 437 498 IPR035979 GO:0003676
Lele54g1433 735 SUPERFAMILY RNA-binding domain, RBD 365 429 IPR035979 GO:0003676
Lele54g1433 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 525 592 IPR000504 GO:0003723
Lele54g1433 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 619 691 IPR000504 GO:0003723
Lele54g1433 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 428 IPR000504 GO:0003723
Lele54g1433 735 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 446 498 IPR000504 GO:0003723
Lele54g1433 735 MobiDBLite consensus disorder prediction 307 321 - -
Lele54g1433 735 Gene3D - 339 430 IPR012677 -
Lele54g1433 735 Gene3D - 603 732 IPR012677 -
Lele54g1433 735 Gene3D - 431 499 IPR012677 -
Lele54g1433 735 SUPERFAMILY RNA-binding domain, RBD 606 726 IPR035979 GO:0003676
Lele54g1433 735 MobiDBLite consensus disorder prediction 289 321 - -
Lele54g1433 735 MobiDBLite consensus disorder prediction 190 272 - -
Lele54g1433 735 MobiDBLite consensus disorder prediction 700 735 - -
Lele54g1433 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 617 698 IPR000504 GO:0003723
Lele54g1433 735 CDD RRM1_NUCLs 524 600 IPR034349 -
Lele54g1433 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 523 599 IPR000504 GO:0003723
Lele54g1433 735 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 460 IPR000504 GO:0003723
Lele54g1433 735 SMART rrm1_1 445 512 IPR000504 GO:0003723
Lele54g1433 735 SMART rrm1_1 375 444 IPR000504 GO:0003723
Lele54g1433 735 SMART rrm1_1 618 694 IPR000504 GO:0003723
Lele54g1433 735 SMART rrm1_1 524 595 IPR000504 GO:0003723
Lele54g1433 735 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 434 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1433 Lele-ChrLele54 18968666 18977298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1433 368 686 Eukaryotic Initiation Factors Gene Family AT1G49760 24.518 1.40e-16 82.0