Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1413 ATGGAGAATCACGCCGCCAACAACACCAAGGCAGTTTCAGGAGGAGCCAAACCCATCAATGACAACGAAGAGCGTTCCAATTTGAATGAACAGGAGCACACCGAACAAGTGGATGTAGATGAGAATGGAGGTGGGGATGAAGAAGAAGGAGAAAGAACTGGATCTGGCTCCATCCAGTCTCCTCATCGCCCCCCTTCCAGAACCCCTTTCACTAATCTCAGTCAGGTCGATGCTGACCTCGCCCTTGCTCGGACCATTCAGGAGCAGGAAAGGGCATACATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGAAGCTGGCAGCTATTTGCATTATGATGGGGATGATTTTGAAGATCTACATGATGGTACAGATGATGATGAAGACAATGGCCTTGATGATGACGATGAAGAAGAAGAAGATGCATTTGATGCCCACGCTCATGGTAGTTCTGGTGAAATTGATAATACCAGCATTGAATTTGACCCTGATGTATTCTCAAGTGATGAAGCCTATGCAAGAGCATTGCAAGAGGCTGAAGAGAGGGAAATGGCGGCTAGGCTATTCGCTATGGCTGGGATAAACGATCGGGAAGCTGAGGACACAGAAGACCATGATGCTCATTCTCGGGTAGAATATTTTTTTTCGTGATCAAAGGTTTTTGAATCTAAGAAGTTTCTCATCAACCATATGGCTCTGCAGGATGCATGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGAACTCCTGGCATTGGGTGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCTACTGATACTATTGCTTCTTTGCCTTCAGTCAAGTACAAGATGGGAAGTGATCAGCATGGAAGTAATGATTCGTGTGTCATTTGCCGGGTGGATTATGAGGATGGTGAATCCTTGACTGCACTTTCATGCAAACATTTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCTGTGCTGAGGTTTCAGCTTCTGGGAGCAACTTGTAG 1038 0.4528 MENHAANNTKAVSGGAKPINDNEERSNLNEQEHTEQVDVDENGGGDEEEGERTGSGSIQSPHRPPSRTPFTNLSQVDADLALARTIQEQERAYMMLRMNNEGSDYGSWEAGSYLHYDGDDFEDLHDGTDDDEDNGLDDDDEEEEDAFDAHAHGSSGEIDNTSIEFDPDVFSSDEAYARALQEAEEREMAARLFAMAGINDREAEDTEDHDAHSRVEYFFSXSKVFESKKFLINHMALQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIASLPSVKYKMGSDQHGSNDSCVICRVDYEDGESLTALSCKHLYHPECINNWLKINKVCPVCCAEVSASGSNL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1413 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 341 IPR013083 -
Lele54g1413 345 MobiDBLite consensus disorder prediction 101 165 - -
Lele54g1413 345 SUPERFAMILY RING/U-box 285 339 - -
Lele54g1413 345 MobiDBLite consensus disorder prediction 123 146 - -
Lele54g1413 345 MobiDBLite consensus disorder prediction 1 15 - -
Lele54g1413 345 MobiDBLite consensus disorder prediction 54 75 - -
Lele54g1413 345 SMART ring_2 294 334 IPR001841 -
Lele54g1413 345 MobiDBLite consensus disorder prediction 23 40 - -
Lele54g1413 345 CDD RING-H2_PA-TM-RING 294 334 - -
Lele54g1413 345 Pfam Ring finger domain 292 334 IPR001841 -
Lele54g1413 345 MobiDBLite consensus disorder prediction 1 75 - -
Lele54g1413 345 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 236 343 IPR043312 -
Lele54g1413 345 FunFam E3 ubiquitin ligase BIG BROTHER-related 260 341 - -
Lele54g1413 345 ProSiteProfiles Zinc finger RING-type profile. 294 334 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1413 Lele-ChrLele54 18856316 18860316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1413 48 219 C3H Transcription Factor Family AT3G19910 49.711 2.28e-39 137