Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1411 ATGTCTTCCTCCGGTGGAATCAATCATGACGGCGGAACAAAACCTTTTTTCTGCTACAAATGCGATCGCAGAGTCAATGTTCCCGCATCCGATTCTTTCGACCCTTTCTGTCCATTCTGCTTGCAAGGCTTTCTTGAAGAAGTCGAAAACCCTAACCCTTTTGCAGACACAGAGCCCTCTTTTGGCTTTGATCCTCTATCCTTCCTTCCCCTTCTATTGTCCACTGCTTCTCGCTCCAGGATTCGACCAGATTCCGTTGATGCTGATATATTCGACCCTTTTCATTTCCTCCAGAACCACCTTCGAGATCTTCAGGCTGATGGTGCGAACGTCCAATTCGAGATCAATCATCCTCATGAACAAGCGTTTCGGCTACCCACAAACATTGGCGATTACTTTCTTGGTCCTGGCCTGGAGCAATTGATACAGCAGCTCGCGGAGAACGACCCAAACCGTTATGGCTCCCCACCTGCCTCCAAAACTGCTGTACAGAATCTTCCAACTGTTACTGTCACTGATGAATTGTTGAACTCGGAAATGAACCAGTGTGCGGTATGTCAGGATGAGTTCGAGAAGGGTACCCAGGTAAAGCAAATGCCTTGCAAGCATGTGTATCATTACGAGTGCCTGCTTCCTTGGCTAGAACTGCACAACTCTTGCCCGGTATGTCGATATGAGTTGCCCACCGATGACCCCGATCATGAGAACCCAGCCCACAGGACTGATTCATTTGTAAATCGTGCACTAAGTTTCCGCCAATCATCGGGCATTGCTGTGTTACACAAGTCTTTAGTGGGGATTGGGAGGGAGGTATTATCTATGACCGGGAACCTTGTAGAAATCAAAGGTCATTTTGTCTTGTGCATTGTCAGGAAATGGAATGGGATTGCTTGGCAGGACAAGGAGATTTTAGGCGTTGTTGAGTGTTTAGGACAATTTGCCCCCCATCTTTACTGTACAGATAATCTTCATTTGTTGATTGACATCACTTCTCTTTGTATGCTTTCTAACTTCTCATCATATTTGAATGAACTTGTCCCCACGTGGGCGGGTTATGAATTAGATGATCTTAGAAGCAATTCACCGAGATAA 1092 0.4615 MSSSGGINHDGGTKPFFCYKCDRRVNVPASDSFDPFCPFCLQGFLEEVENPNPFADTEPSFGFDPLSFLPLLLSTASRSRIRPDSVDADIFDPFHFLQNHLRDLQADGANVQFEINHPHEQAFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGSPPASKTAVQNLPTVTVTDELLNSEMNQCAVCQDEFEKGTQVKQMPCKHVYHYECLLPWLELHNSCPVCRYELPTDDPDHENPAHRTDSFVNRALSFRQSSGIAVLHKSLVGIGREVLSMTGNLVEIKGHFVLCIVRKWNGIAWQDKEILGVVECLGQFAPHLYCTDNLHLLIDITSLCMLSNFSSYLNELVPTWAGYELDDLRSNSPR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1411 363 Pfam Ring finger domain 181 224 IPR001841 -
Lele54g1411 363 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Lele54g1411 363 FunFam E3 ubiquitin-protein ligase RING1-like 144 230 - -
Lele54g1411 363 SMART ring_2 183 223 IPR001841 -
Lele54g1411 363 CDD RING-H2_RNF126_like 182 224 - -
Lele54g1411 363 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Lele54g1411 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 228 - -
Lele54g1411 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 230 IPR013083 -
Lele54g1411 363 SUPERFAMILY RING/U-box 162 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1411 Lele-ChrLele54 18849786 18852415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1411 127 235 C3H Transcription Factor Family AT5G01980 47.706 4.28e-31 121