Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele54g1405 | ATGTCTCAGACATCTGGGCTACTCTCTGCTTTTCAGTCTCTCGAACCATTGCAACCTAAAGTCAAGTTCACAGCTGATCCAACACTTGTTTTTGTGGAAAAACATGAAAACGGTGCACTAGGAAGGGAGGCATCTGAGGAAGTTCAAGACCTTGCTGGTGATATGGATCTTTTTGACGAGGATTCGCCATATGGTGAAAGAACTGCATCATTAGAAAGCAGGCCTTCAGCTGGTGATGATGGCACAGAATCTGCTCCTCAGCCACTCCCCTCAATCTCCCCATCGTCCAGTGACCACAGGTGGAGTGATAAAACACCTTATGCTTCAAAGAAGAAGATTCATTCTTGGCATCAACTTCCAAATGGGAATTGGGAGCTGGGGAAGATAATATCCACCTCTGGGACCGAATCAGTTATCACATTGCCTGATGGGAAAGTTTTAAAGGTTAAGGCTGAAAGTTTGATGCCGGCAAACCCTGATATTCTTGATGGAGTGGATGACCTCATGCAGCTTAGTTATTTGAATGAACCATCAGTTTTATACAATCTGCAATACAGATACAACCGAAATATGATTTATACAAAAGCAGGGCCCGTTTTGGTTGCGATAAACCCGTTTAAGAAAGTCCCTCTGTATGGAAATGATTATATTAAAGCATACAAGAATAAAGCTATGGAAAGCCCTCATGTATATGCCATTACAGACACAGCCATCCGGGAAATGATAAGAGATGAAGTGAATCAATCTATAATTATAAGTGGTGAAAGTGGAGCAGGAAAGACCGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCCCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGGAAACTTATTGAGATTCACTTCAGTGAAACTGGAAAAATATCGGGTGCTAATATTCAAACATGTAAGTTTACTGCTGCGTTTGTGGTTAAAACACTATCTCTTATTCCGTTTGAAGGTTTTAACTATTGTGTTTCTATTCACATGTCGAATCTATTTGGCGTTCCCTGTATAACGATAAACAGTTTTGCTAGAAAAGACATTTTATACGAGGATGAAGCCTTGGATGTTGTCCACATCAGCAAAGAAAATCAGGAGAATGTATTTGCAATGCTTGCTGCAGTGTTATGGCTAGGGAACATATCATTTACTGTGATTGATAATGAAAATCATGTCCAACCCGTAGAAGATGAGGGTTTGTTCAACGTTGCTAAATTGATTGGCTGTGACATTGGAGACCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGTAACGACAACATTGTCCAGAAGTTGACGCTATCACAGGCAATTGATGCTAGAGATGCTTTGGCAAAGTCAATATATGCGTGTCTATTTGATTGGCTGGTTGAACAAATAAACAATTCACTTGCTGTTGGTAAAAGACGCACTGGTAGATCAATCAGTATTTTAGACATCTATGGGTTTGAATCTTTTGAGAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCGAATGAGAGATTGCAACAACACTTTAATCGTCACTTATTCAAGTTAGAACAAGAGGATGGCATTGACTGGACTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAGCCACTGGGATTACTATCCCTTTTAGATGAGGAGTCCACTTTCCCAAATGGTACAGATTTGACATTTGCTAACAAGCTTAGACAGCATCTGAATTCAAATTCATGTTTCCAAGGAGAACGAGGCAAAGCCTTTGCTGTGAGTCATTATGCAGGGGAGGTCACCTATGATACAACTGGATTTTTGGAGAAGAACAGGGACCTATTGCACTCGGATTCCATTCAACTTTTATCCTCATGTACATGCCATCTTCCTAAGCAATTTGCAGCCCATATGCTTTTGCAGTCCGAGAAGCCCGTAGTTGGTCCTTTACACAAGTCAGGCGGAGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGTCAGCTGTTTCAACTGATGCAACGTTTGGAGAGCACCACACCACATTTTATTCGATGCATTAAACCTAATAACTTCCAGTCACCGGGATCATATGAGCAAGGGCTTGTACTTCAGCAACTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCAGGTTTTCCTACTAGAATGTCTCATCACAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAATGTTGCATCTCAGGATCCACTCAGTTTTTCAGTTGCAATTCTGCATCAGTTTAGTATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCCGAACAGGACAGATTGGAGTGCTGGAAGATACTAGAAATCGTACCCTCCATGGCATCTTACGTGTCCAAAGTTGCTTCAGGGGTCACCGAGCACGTTGTTATCACAAGGAGCTTAAGAGAGGAATCACTACACTCCAGACATTTGTTAGGGGAGAGAAAACAAGGAAGGAATATGCAGCTTCACTTCGGCGACATAGAGCTGCGGTTCTTATACAGAAGCATATGAAAGCAGTATTTGCGAGAAACAGAATGAAGAATATCTGTGATGCTTCGATAGTCATTCAATCAGTTATTCGTGGTTCGTTGGCCAGAAGATGCTCAGGAGATATGGGATTGTTGAAATCTATAGGGATGAAGACGAATGAGTCAGACGAAGTGCTAGTCAAGGCTTCTTTCCTGACTGACTTGCAGCGTCGGGTACTCAAGGCTGAAGCTGCCGTGAGAGTGAAAAAGGAGGAAAATGACGTTCTTCACCAGCGTCTCCAACAGTATGAGAGCCGTTGGTTTGAGTATGAATCCAAGATGAAATCAATGGAAGAAGGATGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAAAAGAGCTTAGCAACTGATGATTCTGCAAGAAATTCGGATGCTTCTGTGAATGCAAGTGATGATAGAGATTACAGTTCAGATATAGGAAGCCACCATAGGCGCCAAGAAAGCAGCTCAAGTGTAGGAAATTATCACAGACGCCAAGAAAGCAATGGGTTTAGATCCATGGGTGCAGGTTTGAACGTCATAAGTGGGTTGGCTCATGAATTGGAGCAGAGGCGTCAAGTATTTGGTGACGATGCCAAGTTCTTGGTTGAGGTGAAATCAGGTCAAGTTGAAGCAAGTTTGAATCCAGAACAGGAGCTTAGAAGGTTGAAACACACGTTTGAAGCTTGGAAGAAAGATTATGCGGCAAGACTACGTGAAACAAAGGCAATTTTACATAAGCTTGGAAATGAAGAAGGGGCGATTGACAAAGTGAAGAAAAGGTGGTGGGGAAGAAGGAACAGTACGAGGTTTAGTTGA | 3459 | 0.416 | MSQTSGLLSAFQSLEPLQPKVKFTADPTLVFVEKHENGALGREASEEVQDLAGDMDLFDEDSPYGERTASLESRPSAGDDGTESAPQPLPSISPSSSDHRWSDKTPYASKKKIHSWHQLPNGNWELGKIISTSGTESVITLPDGKVLKVKAESLMPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNRNMIYTKAGPVLVAINPFKKVPLYGNDYIKAYKNKAMESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKFTAAFVVKTLSLIPFEGFNYCVSIHMSNLFGVPCITINSFARKDILYEDEALDVVHISKENQENVFAMLAAVLWLGNISFTVIDNENHVQPVEDEGLFNVAKLIGCDIGDLKLTLSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINNSLAVGKRRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEDGIDWTKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLRQHLNSNSCFQGERGKAFAVSHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCTCHLPKQFAAHMLLQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHHKFARRYGFLLLENVASQDPLSFSVAILHQFSILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHRARCYHKELKRGITTLQTFVRGEKTRKEYAASLRRHRAAVLIQKHMKAVFARNRMKNICDASIVIQSVIRGSLARRCSGDMGLLKSIGMKTNESDEVLVKASFLTDLQRRVLKAEAAVRVKKEENDVLHQRLQQYESRWFEYESKMKSMEEGWQKQMRSLQSSLSIAKKSLATDDSARNSDASVNASDDRDYSSDIGSHHRRQESSSSVGNYHRRQESNGFRSMGAGLNVISGLAHELEQRRQVFGDDAKFLVEVKSGQVEASLNPEQELRRLKHTFEAWKKDYAARLRETKAILHKLGNEEGAIDKVKKRWWGRRNSTRFS | 1152 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele54g1405 | 1152 | CDD | MYSc_Myo8 | 177 | 802 | IPR036022 | - | |
| Lele54g1405 | 1152 | ProSiteProfiles | IQ motif profile. | 818 | 845 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | Coils | Coil | 934 | 968 | - | - | |
| Lele54g1405 | 1152 | MobiDBLite | consensus disorder prediction | 1000 | 1043 | - | - | |
| Lele54g1405 | 1152 | MobiDBLite | consensus disorder prediction | 1022 | 1038 | - | - | |
| Lele54g1405 | 1152 | MobiDBLite | consensus disorder prediction | 35 | 104 | - | - | |
| Lele54g1405 | 1152 | FunFam | Unconventional myosin-XIX | 516 | 704 | - | - | |
| Lele54g1405 | 1152 | Gene3D | Kinesin motor domain | 499 | 743 | IPR036961 | - | |
| Lele54g1405 | 1152 | ProSiteProfiles | IQ motif profile. | 839 | 868 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | ProSiteProfiles | Myosin motor domain profile. | 163 | 814 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | PRINTS | Myosin heavy chain signature | 289 | 316 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | PRINTS | Myosin heavy chain signature | 193 | 212 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | PRINTS | Myosin heavy chain signature | 504 | 532 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | PRINTS | Myosin heavy chain signature | 553 | 581 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | PRINTS | Myosin heavy chain signature | 247 | 272 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | Gene3D | - | 818 | 865 | - | - | |
| Lele54g1405 | 1152 | Gene3D | - | 866 | 909 | - | - | |
| Lele54g1405 | 1152 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 110 | 159 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | MobiDBLite | consensus disorder prediction | 1000 | 1021 | - | - | |
| Lele54g1405 | 1152 | Pfam | IQ calmodulin-binding motif | 891 | 906 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | Pfam | IQ calmodulin-binding motif | 841 | 859 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | Pfam | IQ calmodulin-binding motif | 820 | 837 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | Pfam | Myosin head (motor domain) | 165 | 329 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | Pfam | Myosin head (motor domain) | 378 | 802 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | Gene3D | Kinesin motor domain | 131 | 341 | IPR036961 | - | |
| Lele54g1405 | 1152 | SMART | MYSc_2a | 157 | 815 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele54g1405 | 1152 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 389 | 682 | - | - | |
| Lele54g1405 | 1152 | SMART | iq_5 | 838 | 860 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | SMART | iq_5 | 864 | 886 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | SMART | iq_5 | 815 | 837 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | SMART | iq_5 | 887 | 909 | IPR000048 | GO:0005515 | |
| Lele54g1405 | 1152 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 137 | 860 | IPR027417 | - | |
| Lele54g1405 | 1152 | Gene3D | - | 514 | 704 | - | - | |
| Lele54g1405 | 1152 | PANTHER | MYOSIN | 156 | 1149 | - | - | |
| Lele54g1405 | 1152 | Gene3D | - | 748 | 812 | - | - | |
| Lele54g1405 | 1152 | MobiDBLite | consensus disorder prediction | 86 | 102 | - | - | |
| Lele54g1405 | 1152 | Gene3D | - | 378 | 387 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele54g1405 | Lele-ChrLele54 | 18811646 | 18821533 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele54g1405 | 9 | 1151 | Myosins gene family | AT1G50360 | 70.583 | 0.0 | 1659 |