Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1402 ATGGCCGAGTCACCCTCTCCGACGCCTGAGCAACCCTTGCCGGAATCCGATGATTCCCAGTACTGGTGCTACCACTGCGACAAGCGTGTGTCCGTAGAAACGCATCCTGAGGGCCCTGACATTCTCTGCCGCGAGTGCAAGCATGGGTTCGTCGAATCGATTCCTTCTCCGTCTTTGGCTCCACCCTCTACGACTTCTGATCTGATTGACGATCCTCATTTTGAATCGCAATTTCTGCGCGTACTTCGGCTACTTGCAGAGTCGGCGCGTGATGACGACGGGCCTCCTCCTCCGTCTCGAAACCGCTCCTCAGGCGATGATTTTCTCAGGGTTGAGCTCGAGGATTGGGGTGACGATGAAGAAAGCAGCAACAACAATAACAACGATGAGGACGACGAAGATGATGGGGTGGAGTTTAACGATGAAGGAGAAGAGCACGAAGGTGCTGAAGAGCATGAAGATGGACTAGGAATAGAGGACTTAAGTGGGGACGAAGCCGATGAAGATCTGAGAAGGAGGAGTATGCGGAACCGGATCAGAGACTTGACCAGTCGGATCAGAGATTTGGCAACCGGCACGAGGAGCAGGAGGAACAGGATCTTGGATTGGGCTGATATACTGATGGGTCTTGAAGACAATTCCATAGAACTGAGGCTTCAAGTGCCTGATTCGGATCGATTTTTCGGGAATCCTGGAGATTACGTCGATGCTGCTGATTATGAAGCTCTGCTGGTGACCTTGGCAGAAAGCGATGGAAGCGGGAGAAGAGGGGCTCCGCCGGCGGCAAAATCAGCGGTGGAGTCGCTGCCGACGGTGGAGATTGTGTCAGAGGATCAAGCCTTGGTGTGCGCTATATGCAAAGATATGTTGGGTGTTGGAAGCATGGCAAAGCGATTGCCCTGTGGACATCAGTACCATGGGGATTGCATAGTGCCTTGGTTGAGCTCCAGAAATTCATGCCCAGTGTGCAGGTTTGAGCTTCCAACGGATGACCAGGATTATGAGGAGGAAAAGAAGAAGAAGGTGATTGCCACTACTGCTAATGGGGCATCGGGTTCTGGTGGAACCGATGCGGTATCGGAACAACTGATATGCACAGGGCATGATTGGGAGGTTGCTGTAGTTGCTCCTTTTGAAAAAGCATTGTTGTTAATTCCTGTTTCTTGGAATGGAATTCCTTCTAGAGTCTTCTGTCTTGGAACACTTTAA 1209 0.5136 MAESPSPTPEQPLPESDDSQYWCYHCDKRVSVETHPEGPDILCRECKHGFVESIPSPSLAPPSTTSDLIDDPHFESQFLRVLRLLAESARDDDGPPPPSRNRSSGDDFLRVELEDWGDDEESSNNNNNDEDDEDDGVEFNDEGEEHEGAEEHEDGLGIEDLSGDEADEDLRRRSMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEALLVTLAESDGSGRRGAPPAAKSAVESLPTVEIVSEDQALVCAICKDMLGVGSMAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFELPTDDQDYEEEKKKKVIATTANGASGSGGTDAVSEQLICTGHDWEVAVVAPFEKALLLIPVSWNGIPSRVFCLGTL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1402 402 SMART ring_2 283 323 IPR001841 -
Lele54g1402 402 FunFam E3 ubiquitin-protein ligase RING1-like 246 330 - -
Lele54g1402 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 328 - -
Lele54g1402 402 MobiDBLite consensus disorder prediction 87 172 - -
Lele54g1402 402 Pfam Zinc finger, C3HC4 type (RING finger) 283 323 - -
Lele54g1402 402 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Lele54g1402 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 330 IPR013083 -
Lele54g1402 402 SUPERFAMILY RING/U-box 278 330 - -
Lele54g1402 402 MobiDBLite consensus disorder prediction 112 149 - -
Lele54g1402 402 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1402 Lele-ChrLele54 18794325 18796478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1402 194 395 C3H Transcription Factor Family AT5G01980 40.000 7.63e-39 144