Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1382 ATGCAGCCTACAATTTGCTCTCTAAAGGTCGATCTTTCTGTCACATTTGGTAAATTATCAGGTAGCTCAATAAGGGAGCTGGAACAGGGAAAGAAAAGGTATTCAGATTTCATGGCTCAGCTAGAGTGTATTTATATTAGTTCATCGGATGATGACTTGGAGCTGGAGGAGATAGAAAATCCAAATTATGGAAATCGTTCTGGTTGGCCTCCTCGTGAAAGCAATGCTGGTTATGGTGGAGGGCTTACACTTGACAGTTTTTCAAGACGGGCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCACTGTCTGAGCACTATACTGAACCTGGGTCCAGCAGTTATGTGCCAAATCTCAGAGTCACACATGGAGATGGATCTTTCAATGTTCTGAAGAATGGAAATACAAGTCAGTTTCAGACAGTTAATTCTCGAATTGTGAAATCTTCTGGTGCTGATTATGAGAAAATACCATCCCAACAAGCTTTAAAGAGGGCCCTTTCATCATCGCCTCTGCCAGCTTCAACAAAGCCATTTCCATCTTCTCTTCAGTCATTTGCACCGGGAAGTAGCATGAACAGCAACCCGGGCACTTTGCATGATAACTATGGCAGGGGCAATGATGAATGTGCGATGTATCAAAATGGTGGGATTAGGATTCTTCCTCCATCTATGATTCATGGAAAGTCTATCTCTAACACACAGTTAGCTAGTTCAAGTGAAGCTGTATACCGTTCTGGGGCAGGGGAAGAAAGAGCCTCGGAAAATGATGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTAATGGTTTATTGTCTGTGTCGCTTCTGAGACATCAGAAAATTGCATTAGCTTGGATGGTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGAATTCTGGCTGATGATCAGGGGCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGCAATTGCAGTCAAAATCGAAAGCAGATGAGATGTCCAATCATAAAGCTGAAGCATTAAATTTGGATGAAGATGATGAAAATGATAATGCTGGTGGTACTGCTGAACAATCTAAAAAGAATGAAGAAGATGACATAAAACCTATTCCTGAATCAGTTAGTTCATCTTCAACAAAGGTGGTTGGCAGGAAAAGACCAGCTGCTGGCACACTGGTTGTTTGCCCTGCTAGTGTTCTCCGACAGTGGGCGAGGGAATTGGATGACAAAGTAGGAGATGAAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCGAAATATGATGTTGTTCTCACAACATATTCTATTGTGACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGATGATGAAATTGATGAAAAAATGGGGGAAAAATTTGGGTTATCCTCTGAGTTTGCTTATGGTAAAAAGAGGAAAAAGGTTTATAATGCAAGTAAAAAGAGTAAAAAGGGTAAAAAGGGAATTGACGGTTCTTTTGATTGTGCATCTGGTCCCCTTGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAAACAATAAAGAATTATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAACGCTATTGAAGATCTCTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCGGTTCTTAGGGCTATAATGCTACGTCGTACTAAAGGAACATTGATTGATGGTCAGCCTATAATCACTCTGCCCCCTAAGACTGTTCAGCTGAATAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAATCAATTTAAGGCATACGCTGCTGCTGGTACAGATACACCAGAAGATCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAACATTTGACGGGTTATGAAAATATGTGCCCAGCTACTGATTGTAAAGAACAAATTGGTGATGATGTTGTCTTCTCCAAAGCTACATTAAGAAGTTGCATCTCCGGTGATCCTGGTGATAGTAGTTCTTCAGATTCACGCCTTGTTGATTATTCAGTTGTGCAGCAGAGCAATTACAGTTCATCTAAAATCAAGGCACTCCTTGAGATTCTGGAGCTGCATTGCTCTGGTCGTTCTAGAAATTCACTGCCTTCTGAAACTTCAGATATTGAAAACTTAGATTTGGATGTGATTGTTACAAGGCCCACGAGAAAATATTCAGAGAGCACAACCGATGGACCATTAAAGGCTATCGTTTTTTCCCAGTGGACTAGCATGTTGAACTTAGTGGAAGATTCGCTGAAGGACTCTGGCCTTCGATACAGGAGACTTGATGGTACCATGACGCTGGTTGCTAGGGATAAGTCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTCCTGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTTCTGCTTGTCATGTTATTCTTTTAGATCTTTGGTGGAATCCAACAACTGAAGACCAAGCTGTCGATCGAGCTCACAGGATCGGACAGACGCGTCCTGTTACTGTGACGCGGCTCACTATAAGAGATACAGTTGAAGATAGAATCTTGGCTCTCCAGGGAGACAAGAGAAAAATGGTCGCATCTGCTTTTGGTGAAGATCAAGCTGGCGGGACGGCAACTCGCCTAACAGTGGATGACCTAAAATATCTGTTCATGGTCTGA 2898 0.4179 MQPTICSLKVDLSVTFGKLSGSSIRELEQGKKRYSDFMAQLECIYISSSDDDLELEEIENPNYGNRSGWPPRESNAGYGGGLTLDSFSRRANTSNASSSGAYNHSLSEHYTEPGSSSYVPNLRVTHGDGSFNVLKNGNTSQFQTVNSRIVKSSGADYEKIPSQQALKRALSSSPLPASTKPFPSSLQSFAPGSSMNSNPGTLHDNYGRGNDECAMYQNGGIRILPPSMIHGKSISNTQLASSSEAVYRSGAGEERASENDERLIYQAALEDLNQPKVEANLPNGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQGLGKTISMIALIQMQRQLQSKSKADEMSNHKAEALNLDEDDENDNAGGTAEQSKKNEEDDIKPIPESVSSSSTKVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEDDEIDEKMGEKFGLSSEFAYGKKRKKVYNASKKSKKGKKGIDGSFDCASGPLAKVGWFRVILDEAQTIKNYRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGQPIITLPPKTVQLNKVDFSIEERAFYTKLEADSRNQFKAYAAAGTDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPATDCKEQIGDDVVFSKATLRSCISGDPGDSSSSDSRLVDYSVVQQSNYSSSKIKALLEILELHCSGRSRNSLPSETSDIENLDLDVIVTRPTRKYSESTTDGPLKAIVFSQWTSMLNLVEDSLKDSGLRYRRLDGTMTLVARDKSVKDFNTDPEVTVLLMSLKAGNLGLNLVSACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILALQGDKRKMVASAFGEDQAGGTATRLTVDDLKYLFMV 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1382 965 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 723 IPR013083 -
Lele54g1382 965 Gene3D - 387 477 IPR038718 -
Lele54g1382 965 Gene3D - 742 960 IPR027417 -
Lele54g1382 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 947 IPR027417 -
Lele54g1382 965 Gene3D - 496 633 IPR038718 -
Lele54g1382 965 MobiDBLite consensus disorder prediction 367 384 - -
Lele54g1382 965 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 385 474 - -
Lele54g1382 965 MobiDBLite consensus disorder prediction 93 115 - -
Lele54g1382 965 CDD SF2_C_SNF 812 917 - -
Lele54g1382 965 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 790 960 IPR001650 -
Lele54g1382 965 CDD DEXDc_SHPRH-like 290 622 - -
Lele54g1382 965 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 503 634 - -
Lele54g1382 965 MobiDBLite consensus disorder prediction 169 206 - -
Lele54g1382 965 MobiDBLite consensus disorder prediction 354 396 - -
Lele54g1382 965 Pfam Helicase conserved C-terminal domain 812 907 IPR001650 -
Lele54g1382 965 ProSitePatterns Zinc finger RING-type signature. 686 695 IPR017907 -
Lele54g1382 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 622 IPR027417 -
Lele54g1382 965 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 584 IPR014001 -
Lele54g1382 965 SMART ultradead3 286 601 IPR014001 -
Lele54g1382 965 SUPERFAMILY RING/U-box 677 716 - -
Lele54g1382 965 MobiDBLite consensus disorder prediction 169 204 - -
Lele54g1382 965 Pfam SNF2-related domain 297 668 IPR000330 GO:0005524|GO:0140658
Lele54g1382 965 Gene3D - 258 352 IPR038718 -
Lele54g1382 965 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 125 675 - -
Lele54g1382 965 Pfam Zinc finger, C3HC4 type (RING finger) 676 707 IPR018957 GO:0046872
Lele54g1382 965 SMART helicmild6 824 907 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1382 Lele-ChrLele54 18706930 18713030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1382 83 863 RAD5 or RAD16-like Gene Family AT3G20010 47.978 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele54g1382 SNF2_N 4.7e-64 CL0023