Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1381 ATGGGACGAGCTGAGCGGAGCAGTTTGGTTTATAGAAGGGGGAGGAGGCTCCAGGCATTGATGGGTTTACTGTTGTCTAAGCAACATATTGGTAGTACGAAAATGGAGCCAACAATATATCGAAACAGATATGACTTCAAACACGAGCTGGAATGTGGTTCAATCTCCAAATTGATGCTCCACAATTTGGATCATGTCCGTGAATTCATCAACTCAACTTGGAGAGTTTGTTCTCTGGTAGGTGGTTGGGTTTCTGGCTTAATATCACAAACCTATAGAGACGTGGAAAGAAAAGGTTGTTCAGATTTCATGGCTCAACTGGACTCTATATATATTAGTTCATCAGATGATGACCTGGAGCTAGAGGAGACAGAAACCTCTAATTATAGGAAAACCCCAGAATGGGCTGCCGGAGGAAGTAATGCCGGCTATGGCGGAGGGCTTAAGCAGGATAGTTCTTCTAAATGGGAAAATACTTCGAATGCAAGCTCTTCCAGGGCTAATAATCACTCACAAGTCAGGCACAGTACTAAACACTGGCCTAGCAACAATGTGCGGAATCACAGGGTAGCACAAAGAGACGAATCTTTCAATTTTTCAGAAAACGGAAAAACAAATCAGCATCAGGCAGTCGGTTCACGAAGTGCTAATACTGGTGCTGATTATGGAAAAATGCCATCCCAACAAGCATCAAAAAGGATCCTTCCTTCATATCTTCAGCCATCTACTGAAAAGCCTCTTCCATCTTCTCTCAAGTCATTTTCACCAGATACTAGGCCGAACAATTTAAAAGATAACATGAGCAACATGAGCAGCAGAAGCCATATTCATGATACTCATGGGAATTGTCATAATGATGCAATTAGGATTCTTCCCCCAACTTTGATGCATGGAAAAAACCTCCCTTTTATGCAGTTACCTAGTTCGAGTGAATCTACGTATCATTCTGGTGCAGGTGGAGAGAGGGCCTCTGAAACTGATGAAAGGCTAATTTATCAGGCAGCATTGGAGGACCTCAATCAGCCAAAGGTTGAAGCTACTTTGCCTGATGGTTTATTGTCTGTATCACTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTCCAGAAGGAAACTAGAAGTTTGCATTGCTTGGGAGGAATTCTGGCTGATGACCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGATCATTGCAGTCAAAATCAAAAACAGATGAGATGTGCAATCGTAAAGCTGAAGCATTAAATTTGGATGAGGATGATAACAATGATAAGGGCAATGGTACTGTAGAACAATCTAAAAAGAGAGAACAAGTTGATAATATAAAACCTTCAACACAGGTGCTTGGTAGGAAAAGAGCAGCTGCTGGTACACTGGTTATCTGCCCTGCTAGTGTTCTGCGACAGTGGGGGAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTGAGCTCTCTGTGTTGGTTTATCATGGGGGCAATAGGACAAAGGATCCTGTTGAACTTGCTAATTACGATGTTGTTCTCACAACATATTCCATTGTGAGTACTGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGGAAAAAATGAGGAAAAATTTGGGTTATCCTCTGAGTTTGCGTTTGGTAAAAAGAGGAAAAAGACTTATAACACAAGTGAAAAGAGTAAAAAGGGTAAAATGGGAATTGAAAGTTCTTTTGATTGTGCTTCTGGCCCTCTTGCACAAGTGGGTTGGTTCAGGGTTGTTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGTACACCAATTCAAAATACTATAGACGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGAATACAAGTCTTTCTACAATACAATAAAGGTACCAATATCTAAAAATTCTATCCAGGGTTACAAGAAGCTTCAAGCGGTTCTGAGGGCTATAATGCTACGTCGTACAAAAGGAACATTGATTGATGGGGAGCCTATAGTTAATTTGCCCCCTAAAACAATTCAGCTGAATAAGGTGGTTTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATACACGAACTCAATTTCAGGCATATGCTGCTGCTGGTACAGTCAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGCCTCCGTCAAGCTTGTGACCACCCATTTCTTGTTAAAGATCATTGTTCTGATGTTGTTGGAGGAATTTCAATTGAAATGGCAAAAATGCTTCCAAGGGAGATGCTGATCAATCTCTTTAATTGCTTGGAAACATCCTTTGCCATATGTGGTGTTTGCAATGATCCACCTGAAAATCCAGTCGTTACTATGTGTGTTGATTGCAACGAAAAAATTGGTGATGATGTTGTTTTCTCCAAATCTACTTTGAGAAGTGGTATCTCTGGCGGCCTTGGGGATCCTAGTTCTGCAAGTTATCATCATGTTGATTATTCCGTAGTACAGCAGAGGAATTACATTTCATCTAAAATCAAGGCAGTCCTTGAGATTCTGCAGTTATATTGTAAAGTAAAGAATCCAGGTTCTGACGGATTGAGTACTCCAGGATGCAGTGGATATTCATCTTTTGATACTTCAGATGATGAAGATTTCTATTCAGAAGTTCGTCCTGCAAAATACACAAGAAAATATTCAGAGTGCTCCACTGAAGGAAGAATGAAGGCTATTGTTTTTTCCCAGTGGAATAGCATGTTGGACTTGGTTGAACATGCATTGGAAGAGTTCTCTATTCCGTACAGGAGACTTGATGGCACCATGACGCTGGTTGCAAGGGATAAAGCTGTGGAGGATTTTAATACTAATCCCGAGGTAACTGTGATGCTGATGTCATTAAAAGCAGGAAACCTTGGTTTAAACATGGCTGCTGCATGCCATGTGATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGATCCGTCCTGTTACTGTGACACGGCTCACCATAAAAAATACTATAGAGGATAGAATCTTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCAAGGCGGGGGTTCTGCAACTCGCCTTACGGTGGACGATCTAAAATATCTTTTCATGGTCTAA 3246 0.4119 MGRAERSSLVYRRGRRLQALMGLLLSKQHIGSTKMEPTIYRNRYDFKHELECGSISKLMLHNLDHVREFINSTWRVCSLVGGWVSGLISQTYRDVERKGCSDFMAQLDSIYISSSDDDLELEETETSNYRKTPEWAAGGSNAGYGGGLKQDSSSKWENTSNASSSRANNHSQVRHSTKHWPSNNVRNHRVAQRDESFNFSENGKTNQHQAVGSRSANTGADYGKMPSQQASKRILPSYLQPSTEKPLPSSLKSFSPDTRPNNLKDNMSNMSSRSHIHDTHGNCHNDAIRILPPTLMHGKNLPFMQLPSSSESTYHSGAGGERASETDERLIYQAALEDLNQPKVEATLPDGLLSVSLMRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSKSKTDEMCNRKAEALNLDEDDNNDKGNGTVEQSKKREQVDNIKPSTQVLGRKRAAAGTLVICPASVLRQWGRELEDKVGDEAELSVLVYHGGNRTKDPVELANYDVVLTTYSIVSTEVPKQPLVEEDEIDGKNEEKFGLSSEFAFGKKRKKTYNTSEKSKKGKMGIESSFDCASGPLAQVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAEYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIVNLPPKTIQLNKVVFSIEERAFYTKLEADTRTQFQAYAAAGTVNQNYANILLMLLRLRQACDHPFLVKDHCSDVVGGISIEMAKMLPREMLINLFNCLETSFAICGVCNDPPENPVVTMCVDCNEKIGDDVVFSKSTLRSGISGGLGDPSSASYHHVDYSVVQQRNYISSKIKAVLEILQLYCKVKNPGSDGLSTPGCSGYSSFDTSDDEDFYSEVRPAKYTRKYSECSTEGRMKAIVFSQWNSMLDLVEHALEEFSIPYRRLDGTMTLVARDKAVEDFNTNPEVTVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKNTIEDRILALQEEKRKMVASAFGEDQGGGSATRLTVDDLKYLFMV 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1381 1081 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 154 1080 - -
Lele54g1381 1081 SMART helicmild6 940 1023 IPR001650 -
Lele54g1381 1081 CDD DEXDc_SHPRH-like 357 682 - -
Lele54g1381 1081 MobiDBLite consensus disorder prediction 196 264 - -
Lele54g1381 1081 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 445 534 - -
Lele54g1381 1081 Pfam Helicase conserved C-terminal domain 922 1023 IPR001650 -
Lele54g1381 1081 Gene3D - 538 693 IPR038718 -
Lele54g1381 1081 Gene3D - 330 418 IPR038718 -
Lele54g1381 1081 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 372 644 IPR014001 -
Lele54g1381 1081 Gene3D - 447 537 IPR038718 -
Lele54g1381 1081 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 913 1076 IPR001650 -
Lele54g1381 1081 Pfam SNF2-related domain 360 759 IPR000330 GO:0005524|GO:0140658
Lele54g1381 1081 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 563 694 - -
Lele54g1381 1081 CDD SF2_C_SNF 924 1033 - -
Lele54g1381 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 682 IPR027417 -
Lele54g1381 1081 SMART ultradead3 353 661 IPR014001 -
Lele54g1381 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1080 IPR027417 -
Lele54g1381 1081 MobiDBLite consensus disorder prediction 421 448 - -
Lele54g1381 1081 MobiDBLite consensus disorder prediction 118 264 - -
Lele54g1381 1081 Gene3D - 697 1080 IPR027417 -
Lele54g1381 1081 MobiDBLite consensus disorder prediction 146 187 - -
Lele54g1381 1081 MobiDBLite consensus disorder prediction 421 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1381 Lele-ChrLele54 18700488 18705729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1381 107 981 RAD5 or RAD16-like Gene Family AT1G50410 53.012 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele54g1381 SNF2_N 2.8e-68 CL0023