Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1379 ATGGATCCGTGTGAAAATGCAGAAGCAGAGCGCGGGCGCCAGGTATTCGAAATGGCGGGTGGAAAATCAACCAGGTCGAACCCATCACAGGCTAGAAAGAGAGTTGATGCCATCGATTATCCGGCTGCTACTGGTCTCGTTCGCGCCAAAGATGGCAGTGCTTTTGCCAAATGTGAAGAGTGCAACAAGAATGTTCCTGTGGCCCTAATCAGCATGCACAGTTGCAGTCTTGATGCCAAAATTAAAATGAATCTGGAGGCTCAGGTTGTGGAAAAACCTGCTGAGGTAAAGAAGCCAGTGGAGAGGAAGAAGCCCAAGTCAAGTGAGCCTAAGGCAAAGAAGGCCAAGGTGGAGAAGGCGGAGAAGGGAAAGAAGGGCAAGGATCCTAACAAGCCCAAGCGTCCTCCTACAGCTTTCTTTGTCTTCTTGGAAGAGTTTAGAAAATCTTTTAAGGAAGCAAATCCTGATTCTAAGGATGTCAAAAGGGTTGGTAAGGAGGCAGGTGAGAAGTGGAAGTCCTTATCTGATGAGGAGAAGAAGCCTTACTTGGATAGAGCTGCTGAACTCAAGGCAGAATATGAGAAAGCATTGGAAAAATATAATGCTGCGGAAGACGGAGCTGATCAAGAGGGATCTGATAAGGAAGATGCGGCTGAGGAAGTGGGCCAAGAAGAGTCTGAGAAGGATGACGCAACGAAGGACAATGAAGAGCTCACTGATGGGGAGTAA 729 0.4787 MDPCENAEAERGRQVFEMAGGKSTRSNPSQARKRVDAIDYPAATGLVRAKDGSAFAKCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVEKPAEVKKPVERKKPKSSEPKAKKAKVEKAEKGKKGKDPNKPKRPPTAFFVFLEEFRKSFKEANPDSKDVKRVGKEAGEKWKSLSDEEKKPYLDRAAELKAEYEKALEKYNAAEDGADQEGSDKEDAAEEVGQEESEKDDATKDNEELTDGE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1379 242 MobiDBLite consensus disorder prediction 1 35 - -
Lele54g1379 242 SUPERFAMILY HMG-box 123 202 IPR036910 -
Lele54g1379 242 CDD HMGB-UBF_HMG-box 132 198 - -
Lele54g1379 242 MobiDBLite consensus disorder prediction 153 182 - -
Lele54g1379 242 Coils Coil 214 234 - -
Lele54g1379 242 MobiDBLite consensus disorder prediction 90 138 - -
Lele54g1379 242 SMART hmgende2 131 202 IPR009071 -
Lele54g1379 242 MobiDBLite consensus disorder prediction 91 132 - -
Lele54g1379 242 MobiDBLite consensus disorder prediction 226 242 - -
Lele54g1379 242 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 30 228 - -
Lele54g1379 242 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 132 201 IPR009071 -
Lele54g1379 242 MobiDBLite consensus disorder prediction 200 242 - -
Lele54g1379 242 Pfam HMG (high mobility group) box 132 201 IPR009071 -
Lele54g1379 242 Coils Coil 183 210 - -
Lele54g1379 242 MobiDBLite consensus disorder prediction 209 225 - -
Lele54g1379 242 Gene3D High mobility group box domain 115 215 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1379 Lele-ChrLele54 18685095 18687073 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele54g1379 HMG_box 1.4e-21 CL0114