Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1374 ATGCTAGACAATAGTGCTAATTCTTCTGATGCCGCTTCCTCAGAAAATAATGGAGTGATCCTTCCCAGAAGAAAAAGAAGACCCCCAGGCACACCGGATCCAGATGCTGAGGTCGTGTGTTTGTCACCCAAGACTCTGCTGGAATCAGACAGATATGTGTGTGAGATCTGTAATCAAGGGTTTCAAAGAGACCAGAATCTTCAGATGCATAGAAGAAGACACAAGGTGCCTTGGAAATTGCTGAAAAGGGAGAGTAGCAGCACGCAAGAGGTGAAGAAGAAGGTGTTCGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTTGCCATGCTCTTGGAGATCTCGTGGGCATTAAGAAGCATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTTCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACCAGAGGCCATTCCTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATTGAACATCAAGACGCTTGCACTGTTCGAACAGCTTCAAGCACAAGTCCATCTAGTGAGGCCAATTTAGTTCCATTAATGCAAGGCTTGCCTGTGCCGAAACCACCTGCGTTGTTAACCTCGGACTTACAAAACAATAAGCCTACCTACACCACTTCTTCTCATCATCAGAGACATAATAATCTAGAAGAACTCCAGCTCCTACGTTGTTCTTCTTCATCAGATGCTCGACGAAACCGAGGTTGTGATCATGACGAGGATAACAACTACGATACCGATCAAACCCACCTGAAGCTTTCAATAGGGTCGTGCAGCAACAATAATAAGACGAACAAGAATGTTGCGAAAGAAGCAGAAGCAGAAGAAGTACCGAGACTAAGGGAAGTGGGGTGGTTGAAAGAGTGTGCAAATGAAGAGCTCAAGTTGGCGATGGCTGAGAAGGCTTATGCAGAAGAGGCAAGAAAAGAGGCAAAGCGTGAGATAGAGATGGCTGAGATTGAGTTTGGGAAAGCGAAGAGGATAAGGAAGGAAGCACAGGAGGAGCTAGAAAAAGCTGAGGCTTTGAAGAAGCAAGCCATGATGAAGACGAGTTCCACTCTGCTGCAAATTACTTGTCAGGCTTGTAAGCAACAGTTCCAATCCTCCATGGTTGGGGTTTCATCAGAAGAGACGTCTCTTGTTATGAGCTGCATGTCCTCACCCACCACTGAAGGAGAAGGAGATCAATTATAA 1251 0.4572 MLDNSANSSDAASSENNGVILPRRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESSSTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRTASSTSPSSEANLVPLMQGLPVPKPPALLTSDLQNNKPTYTTSSHHQRHNNLEELQLLRCSSSSDARRNRGCDHDEDNNYDTDQTHLKLSIGSCSNNNKTNKNVAKEAEAEEVPRLREVGWLKECANEELKLAMAEKAYAEEARKEAKREIEMAEIEFGKAKRIRKEAQEELEKAEALKKQAMMKTSSTLLQITCQACKQQFQSSMVGVSSEETSLVMSCMSSPTTEGEGDQL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1374 416 Gene3D Classic Zinc Finger 117 195 - -
Lele54g1374 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Lele54g1374 416 Coils Coil 306 368 - -
Lele54g1374 416 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 382 IPR031140 -
Lele54g1374 416 FunFam protein indeterminate-domain 12-like 31 102 - -
Lele54g1374 416 Gene3D Classic Zinc Finger 30 100 - -
Lele54g1374 416 SMART c2h2final6 52 74 IPR013087 -
Lele54g1374 416 SMART c2h2final6 96 126 IPR013087 -
Lele54g1374 416 SMART c2h2final6 132 159 IPR013087 -
Lele54g1374 416 MobiDBLite consensus disorder prediction 1 37 - -
Lele54g1374 416 MobiDBLite consensus disorder prediction 1 16 - -
Lele54g1374 416 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
Lele54g1374 416 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1374 Lele-ChrLele54 18654049 18656298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1374 23 412 C2H2 Transcription Factor Family AT2G01940 55.048 2.67e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele54g1374 None None None