LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele54g1347	ATGATTGGAGGGAAAGATCTTCCTAATGGGCTTGACTCTGATGGGGAGAACTCTCGGAGCAAGCTGTCAAAGCCCCATTTTGCCCGTGGCAAGGAGAACCCTGAAGAGAAATTAGGTTATCCCGTAAAGGGGGCGTATTTTCTGAAGGATTCAGAGGAGGGTGGTGATGGAATTCTATTGAAACCCTCTAAAGTTGGGACTTCGGGCTTACAAGAGCTGACCCTCAGCTACCTTTGTGATAAGGAGATTCCTGGTAAAAGCTTGCTGAGTTCCTTGGATAAAGTCACCTGCAAAGGTAAAGAAGTTCTCGTCTCGGAGGATTCAAATCGGGATGAGAAGTGGGTGGAACGGGATTTTCTGAATTTGAACGGAACCAGGGAGAATTCTTCAAAGCGATCGGTTGAAGAAGAGGTTGAAAGGGAAAATAAGGACAAGAAGCCGAAGCTGGAGACGCTTAATCTCTCTCTCGCCTTGCCTGATGTCTCCCTTTCTCTTACGGCGTCAAACGCCCTGCAAAACGGTGATCAGCCGGTGAGGCCAAAGCCTAGCAAGCCGTCGGCGACTACGTATTCAAATGATTATACAGCGGCTTCTCTATCATACTCGTATTCCCATCCCTTCTCGCACAACCCAAGTTGCTCTCTTACCCGTAATTCTACAGATTTTGATTATTCCGTTAGCAAAGATGATCATATTTGGAACTGCGGAGAGGGGACGAATGGGTCAGTTCATAGTCGGTTCAAGCCGATAGGGGATGGTGTTGCCTTGTCTAATCATGGTGGTGGTGGGTTTAATTCGATCATGCAGGGTAATAATAGTCAGTATAAAACTACAAGTTCAGATAACCATTCTTTTTTTCCATCGGAATTGCCTGCCAGGCCCAGATTTGAAGCTCAGTCAGGGGACTCGAGAGGAAGGAATTCTGAGAATCTGAGAGTATTGGAAGGTTTAGATAGTGGGAAAGTAAGGAAGCTTTCTAGACCAGAGAAAATTCTAAGAGAGATTGTGTTGGAGTCTGTCTCAACCATGGCTGCTCAGTTTCAAGAGCTTACTGATGAAGTGGTTGCATCGACTAAGGAATACTTAAAGAATCTCATTGAGATGCCCGAGAAGAAAGAGGAATTGGTTAGCCTCCAAAATCGGCTTGAGCGAAGATCTGACCTTACTAAGGAGACTCTTTCGAAGTGCCAAAAGGGGCAACTTGAGATTTTAGTTGCTATCAAGATGGGGCTTGCAAGCTTCTTATCTGGCAAAGTCCACTTCTCCGAAACGGTAGAGATTTTCTTGCATTTGAGATGTAGAAATGTGAACTGTAGGAACTTGCTGCCTGTTGATGACTGTGACTGCAAGATTTGTTCTGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTCTGTCTGAACTTTGATTGTGCAAGCAACACATGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGCGGCATTAAGAGGAATCTCATCAAACCTGGTCCTAGCTTAAAAGGGCCATCACGTACCACTGAGATGCAGTTTCATTGCAGTGGATGTGGACATGCTTCAGAAATGTTTGGCTTTGTTAAAGATGTGTTCATATGTTGTGCAAAGGATTGGGGTCTAGAAACCCTGGTGAAAGAGCTTGACTGTGTGAGGAAGATTTTCAAAGGAAGCGAAGATCGCAAAGGGAAGGAATTGCATGTCAAAACTGATGACATGCTCTTTAAGCTCCAAACTAAAACGGTGTCTCCTTTGGATGCCTGCAATTACATCCTACAATTCTTCAATTATGCGGATAGCATGCCAGACCTTCCTGCTTCTGGTATATCCTCAAAGGATTTGTCAGCTTCTCAAGCTAATCTTAGGAAGGAAGCAACATCTCTTTCACAATCTAATTCCCTAATGTCAAAATACACTTATAACTCGGGCTATTCAAGGTCACAATGTGATGTTCTGTCAAATGATCATCATCAGAAAGATCTCAAAACTTCCATCCTAAGTGAATTGAAAAATGAGAGTGATTTCCAGCTGGGGGCTCTGTTAAGAAAAGGTGGGCTTGATAACTTGGAGAGCATTGTGAGGATTAAGGAAGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCCCGGAGAGAAGCGGAAGGGTTCCAAAGGATGATAAGGATGAAAACAGCGCAGATGGAAGAAGAGTATGCCGAAAGGCTTGCCAAGCTCTCTCTTCAAGAGACCGAGGAAACACGGAGGAAGAAATTGGAGGAATTGAAGGTGTTAGAAAATTCCCATTGTGATTACTTTAAAATGAAAATGAGAATGCAAGCTGAGATTGCTGGTTTGTTGGAGAGAATGGAGGAAACAAAGCAGCAATGGGTTTGA	2388	0.4435	MIGGKDLPNGLDSDGENSRSKLSKPHFARGKENPEEKLGYPVKGAYFLKDSEEGGDGILLKPSKVGTSGLQELTLSYLCDKEIPGKSLLSSLDKVTCKGKEVLVSEDSNRDEKWVERDFLNLNGTRENSSKRSVEEEVERENKDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRPKPSKPSATTYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDHIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGGFNSIMQGNNSQYKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENLRVLEGLDSGKVRKLSRPEKILREIVLESVSTMAAQFQELTDEVVASTKEYLKNLIEMPEKKEELVSLQNRLERRSDLTKETLSKCQKGQLEILVAIKMGLASFLSGKVHFSETVEIFLHLRCRNVNCRNLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCSHWCHAACGIKRNLIKPGPSLKGPSRTTEMQFHCSGCGHASEMFGFVKDVFICCAKDWGLETLVKELDCVRKIFKGSEDRKGKELHVKTDDMLFKLQTKTVSPLDACNYILQFFNYADSMPDLPASGISSKDLSASQANLRKEATSLSQSNSLMSKYTYNSGYSRSQCDVLSNDHHQKDLKTSILSELKNESDFQLGALLRKGGLDNLESIVRIKEAEARMFQTKADEARREAEGFQRMIRMKTAQMEEEYAERLAKLSLQETEETRRKKLEELKVLENSHCDYFKMKMRMQAEIAGLLERMEETKQQWV	795

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele54g1347	795	CDD	PHD_OBE1_like	463	522	-	-
	Lele54g1347	795	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	106	794	IPR004082	-
	Lele54g1347	795	MobiDBLite	consensus disorder prediction	169	191	-	-
	Lele54g1347	795	MobiDBLite	consensus disorder prediction	129	146	-	-
	Lele54g1347	795	MobiDBLite	consensus disorder prediction	17	38	-	-
	Lele54g1347	795	Pfam	Coiled-coil region of Oberon	656	784	IPR032535	-
	Lele54g1347	795	Pfam	PHD - plant homeodomain finger protein	433	557	IPR032881	-
	Lele54g1347	795	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	385	400	IPR004082	-
	Lele54g1347	795	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	346	368	IPR004082	-
	Lele54g1347	795	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	691	711	IPR004082	-
	Lele54g1347	795	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	543	562	IPR004082	-
	Lele54g1347	795	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	470	490	IPR004082	-
	Lele54g1347	795	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	424	445	IPR004082	-
	Lele54g1347	795	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	730	752	IPR004082	-
	Lele54g1347	795	MobiDBLite	consensus disorder prediction	126	146	-	-
	Lele54g1347	795	MobiDBLite	consensus disorder prediction	1	39	-	-
	Lele54g1347	795	Coils	Coil	745	765	-	-
	Lele54g1347	795	Coils	Coil	697	717	-	-
	Lele54g1347	795	Coils	Coil	773	793	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele54g1347	Lele-ChrLele54	18506917	18510928	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele54g1347	433	589	PHD Gene Family	AT5G57380	26.752	6.85e-09	57.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele54g1347	54	18506917	18510928	Lele55g0105	55	639513	643056	hybridization
	Lele54g1347	54	18506917	18510928	Lele56g0106	56	1084584	1088050	hybridization