Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1346 ATGATGACGCCCATTTTGAACTTGGAACCTGAAAATCATTCAGAAGTCAGTAGCCAAGTAGCTTCCAATATATCCTTGCAAGAAACGTCCCATGATCTTACCAAGGACAGCAACACCACTTCTTCCTGTCTCACAAATCTCACTAAACCTGAAACCGATCCCGTGTCCTTTTCCCTCGATTTGACACTCAACTTCAACTCCGGTGATGGCGAGTTGAAGCGCACGAGCGATGCCAGCAGTGAAGTGGGAGCTGAAGCACAACCTTCAGGATCAGCAGTTCCTAGGGTTTTCTCTTGTAATTACTGTAGGAGGAAGTTCTTCAGCTCTCAGGCATTGGGTGGCCATCAAAACGCTCATAAAAGGGAGAGGACAATGGCGAAGCGCGCGATGCGAATGGGGATGTTCACCGAGAGGTATACAAGCCTGGCATCACTGCCTCTTCACGGTTCTGCTTTCCGGTCTCTTGGTATCGAAGCTCATTCTGCCATGCATCAAAGACACATGCCATCACTGAGGGCTCCCAACCTAAGAGCTGGTGCAAAATTCGAGAAAGATTATTTTGGATCATCGATGTTAATGGAATATGATGATAATATGAGTCGGTCTTGGCCCGGGAGTTTCCGGCAGGTGGAAGGCGGAGGCGGTGTCAGTATGGGACACGAACACCCTCAAAGTTCAACTACTAGTTTCGTAGCAGTCGCACCGCCACCGCCACAACCACCACCCCCACAACCACAAACATCCACATCTCCTGATCTCACTCTGAAGCTCTAA 774 0.4922 MMTPILNLEPENHSEVSSQVASNISLQETSHDLTKDSNTTSSCLTNLTKPETDPVSFSLDLTLNFNSGDGELKRTSDASSEVGAEAQPSGSAVPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSAFRSLGIEAHSAMHQRHMPSLRAPNLRAGAKFEKDYFGSSMLMEYDDNMSRSWPGSFRQVEGGGGVSMGHEHPQSSTTSFVAVAPPPPQPPPPQPQTSTSPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1346 257 FunFam Zinc finger protein 2 73 143 - -
Lele54g1346 257 MobiDBLite consensus disorder prediction 233 248 - -
Lele54g1346 257 MobiDBLite consensus disorder prediction 72 92 - -
Lele54g1346 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Lele54g1346 257 Gene3D Classic Zinc Finger 77 144 - -
Lele54g1346 257 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Lele54g1346 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 204 IPR044246 GO:0009788
Lele54g1346 257 MobiDBLite consensus disorder prediction 1 22 - -
Lele54g1346 257 MobiDBLite consensus disorder prediction 206 257 - -
Lele54g1346 257 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1346 Lele-ChrLele54 18502334 18503107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1346 91 257 C2H2 Transcription Factor Family AT1G66140 44.737 2.16e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele54g1346 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1346 54 18502334 18503107 Lele55g0106 55 645326 646099 hybridization
Lele54g1346 54 18502334 18503107 Lele56g0107 56 1090777 1091556 hybridization