Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1344 ATGGGGAAGAAGAAGAAAAGAGTTTCTTCGAAGGTCTGGTGTTACTATTGTGATCGGGAGTTTGATGACGAAAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCTACAAGAAACTATCCACTGCTGGCGGCATGGCCATTCACGTGCTCCAGGTTCATAAAGAAAGCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACGGATATTGAAATATATGGGATGCAAGGGATTCCACCAGATATCTTGGCCGCCCATTATGGAGATGAAGAGGATGAAGCTCCATCAAAAGCAGCCAAAGTGGATATCCCATCAACTCAGCTTGTAGGTGGAGTTGTGCCAGCACCATTAGGCATGGGATATCCTCCTCAGTCAACCTTGGGTACTATGCCACCTATTTATAATCCTGCAGTACCTGTGCCTCATGCCAGTTGGCCAGTTCCACCTCGACCTCAGCCTTGGTATCCGCAACCTCCATCTGTTTCCATTCCTCCTCCTGCCTCATATGTACAGCAGCCATTATTTCCTGTTCAGAATGTGAGGCCACCTCTCCCATCAACCGCATCTTCTACGCTTACAACATCTCAAGTTGCTCCTCCTGGATTGCCTCCAACATCTGCTCCAGTTTCACAACCATTATTTCCTGTTGTTGGAAATAACCATACGATGGCCCAAAGTTCAACATTTCCTGCCCCATCGCTTTCTAGCAGTGTTCCATCTGCATTGCCTGCAAGTGTCCCTGCTGATACTTATTCAAGTGCCAACACAAGTTTGACAAATAATTATCAAGCACTAGGGGTTCCAGGAGGGACAGCAAGCAACTCGCATTTTTATGCTTCTGGTCCAAATACTGGCGGTCCTTCAATTGGACCACCCCCAGTAATTGCAAACAAAGCTCCTGTAACTCAACCTGCCACTAATGAGGTCTATTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTGCCAAAATACCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGACGCAGCCATAGACAAGAGGATACTTCAAAGCAGGCTAGCAGATAAGTTAAAAAGGGATCTCATAGGAAGTTGCAGAACAGCAGTGGTGTTCTAA 1146 0.4642 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCYKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGDEEDEAPSKAAKVDIPSTQLVGGVVPAPLGMGYPPQSTLGTMPPIYNPAVPVPHASWPVPPRPQPWYPQPPSVSIPPPASYVQQPLFPVQNVRPPLPSTASSTLTTSQVAPPGLPPTSAPVSQPLFPVVGNNHTMAQSSTFPAPSLSSSVPSALPASVPADTYSSANTSLTNNYQALGVPGGTASNSHFYASGPNTGGPSIGPPPVIANKAPVTQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILQSRLADKLKRDLIGSCRTAVVF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1344 381 PANTHER ZINC FINGER PROTEIN 207 1 363 - -
Lele54g1344 381 MobiDBLite consensus disorder prediction 190 208 - -
Lele54g1344 381 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Lele54g1344 381 SMART c2h2final6 12 35 IPR013087 -
Lele54g1344 381 SMART c2h2final6 36 59 IPR013087 -
Lele54g1344 381 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lele54g1344 381 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Lele54g1344 381 MobiDBLite consensus disorder prediction 235 254 - -
Lele54g1344 381 Gene3D Classic Zinc Finger 1 66 - -
Lele54g1344 381 MobiDBLite consensus disorder prediction 189 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1344 Lele-ChrLele54 18486079 18490009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1344 1 373 C2H2 Transcription Factor Family AT1G30970 61.757 2.05e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele54g1344 None None None