Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1342 ATGCAGAGCCAGCCCCAGCACCACCCTGTGGCTTTGAGGTTCCATGAGCAAACGGGGAGTAAAAGAAAATACACTTTCATTCAGGCTAAAAGAGCTTGGCTCCCAAAGCTTCTGCTGCTGTGGATCATGATGATGATGCTATTCAGTGGGTCCATCTACAATGCTATGGATGCTGATAATAAAGTTAGGAGGAGAGAGGTTCTGGGTAGCCTCTGTGAGCAAAGGGCCAGGATGTTGCAAGATCAATTTAGTGTTAGTGTTAACCATGTCCATGCCCTAGCTATTCTGGTTTCAACCTTCCACTACTACAGAAACCCATCTGCAATTGATCAGGAAACCTTTGCGGAGTATACTGCCAGAACAGCATTTGAGCGGCCATTACTGAATGGGGTGGCTTATGCACAAAGGGTAGTTGACTCCGGAAGAGAAAACTTTGAGAGCCAACACGGATGGGTGATAAAGACTATGGAAAGAGAGCCTTCCCCCGTTCGAGATGAGTATGCCCCAGTGATATTTGCCCAAGAAAGCCTCTCTTATCTTAAGTCTCTTGATATGATGTCAGGGGAGGAGGACCGAGAGAACATTCTGAGGGCTAGGGCCACTGGGAAAGCTGTACTGACTAGCCCATTCAAGCTGTTGGATTCTCATCATCTTGGTGTGGTTTTGACATTCCCTGTTTACAAATCCAAGCTCTCCCCAGAACCGACTATGAAAGAGCGCATAGAGGCAACTGCAGGATATGTTGGAGGGTCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGGCAGCTTGCTGGTAACCAAGCAATTTTGGTGCATGTGTATGATATCACAAACTCTACTTACCCGCTAATCATGTATGGCAACCAATATGAAGAAGGTGATAAGTCTCTTGTACATAAAAGCAAGCTTGACTTTGGAGATCCTTACAGGAAACATCAAATGATATGTAGGTATCATCAGAAGGCACCAACATCTTGGACAGCGCTCACCACAGCATTTTTATTCTTTGTGATTTGTTTATTAGTGGGATACATTTTATATGGTGCTGCAATTCATATTGTCAAAGTTGAGGATGATTTCCATGAGATGCAGGAACTAAAAGTTCGAGCTGAAGCTGCTGATGTTGCCAAATCCCAGTTTTTAGCAACTGTTTCTCATGAAATTAGAACGCCAATGAATGGCATCTTAGGAATGCTTGGTCTGCTTCTTGATACGGAATTGAGTTCAACTCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGAAAAGCACTGATAGCATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTAGAAGCAGTTCCATTTGACCTGCGTTCCATACTTGATGATGTCCTTTCTTTATTCTCTGAGAAGTCTAGACACAAAGGTTTAGAGTTGGCAGTTTTTGTTTCTGATAAAGTTCCAGACATTGTTAAGGGAGATCCGGGGAGATTCAGACAAATAATAACCAATCTAGTTGGCAACTCTGTCAAATTCACTGAACGGGGGCACATATTTGTTAAGGTTCATCTAGCTGAAAATATAAATGCTACAATTAATGGAAAATCTGAGACATATATAAATGGAGGATCGGATGATGTTGTGCATATGGCTGGCGGTTATCAGTCCAAAACTCTTAGTGGATGTGAAGCAGCTGATGAAAGGAACTGTTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATTTTGCTTTGATGCATCAAGTAAAAAGATGACCACCATTCAAGTTTCTGAGCAAGTCACTCTGATGGTCTGTGTAGAGGATACCGGTATTGGGATTCCCTTTTCTGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGTGGGACTGGTATTGGATTAAGCATCAGTAAGTGTTTGGTTGAATTAATGGGTGGTCAAATTAACTTCATAAGCCGACCCCAGGTTGGGAGCACATTTTCCTTCACTGCAGTTTTTGATACATATAAGAAAAACGCTATCAGTGACGTGAAGAAACATAATGTGGAAGATCTACCCTCTAGTTTTAGAGGACTGAAAGCCATAGTGGTCGATGGAAAACCTGTTAGAGCTGCTGTGACTCGATACCATCTGAAGAGGCTTGGGATAATAGCTAAAGTTGCTAATGACATTAACGAGGCTGTTGCTTTATGCGGGAAAAACGGTCCATTGACATCTGGAATGTTCCAGCCAGATATAATTTTGGTTGAGAAGGACTCGTGGATATCTGGAGAAGATGGAAGCTTCAATGTTTGGCAACTAGACTGGAAACAGAACGGACATACAATTAAGTTGCCCAAATTGATCCTTCTCGCGACCAATATTAGTAATGCAGAGTTTGATAAAGCTAAAGCTGCTGGTTTTGCTGATACTGTGATCATGAAACCTCTGAGAGCTAGTATGGTAGGTGCTTGTCTTCAGCAGGTTCTTGGTGTGGGGAAGAAGAGACAGCAAGGAAAAGACATGGTTAACGGTTCCACTTTTCTTCGAGGCCTTCTTTGTGGAAAGAAAATTTTGGTGGTCGATGACAATGTGGTGAACCGGAGGGTTGCCGCAGGTGCATTGAAGAAGTTTGGAGCTGATGTGAAGTGCGTCGAAAGTGGCAAAGCGGCACTTGAAATGCTTCAATTGCCTCATAGTTTTGATGCGTGCTTCATGGACATCCAAATGCCAGAGATGGATGGGTTTGAAGCAACACGGCAAATCCGGCAGATGGAAAGTGTGGCAAATGAGCAGGCAAATGGGGGATCTAATGAAGGAAATGCCTGTAAAAGTGAGTGGCATTTGCCAGTATTAGCCATGACAGCCGATGTAATTCATGCGACCTATGACGAGTGCCTGAAATGCGGTATGGATGGATACGTGTCGAAGCCGTTCGAGGAAGAGAATCTGTATCAAGAAGTTGCAAAGTTCTTCAAATCCAAGCCTATCTCAGACTCATGA 3003 0.4332 MQSQPQHHPVALRFHEQTGSKRKYTFIQAKRAWLPKLLLLWIMMMMLFSGSIYNAMDADNKVRRREVLGSLCEQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLNGVAYAQRVVDSGRENFESQHGWVIKTMEREPSPVRDEYAPVIFAQESLSYLKSLDMMSGEEDRENILRARATGKAVLTSPFKLLDSHHLGVVLTFPVYKSKLSPEPTMKERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVHVYDITNSTYPLIMYGNQYEEGDKSLVHKSKLDFGDPYRKHQMICRYHQKAPTSWTALTTAFLFFVICLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVKGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENINATINGKSETYINGGSDDVVHMAGGYQSKTLSGCEAADERNCWDNFKHLIADEEFCFDASSKKMTTIQVSEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVFDTYKKNAISDVKKHNVEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIIAKVANDINEAVALCGKNGPLTSGMFQPDIILVEKDSWISGEDGSFNVWQLDWKQNGHTIKLPKLILLATNISNAEFDKAKAAGFADTVIMKPLRASMVGACLQQVLGVGKKRQQGKDMVNGSTFLRGLLCGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHSFDACFMDIQMPEMDGFEATRQIRQMESVANEQANGGSNEGNACKSEWHLPVLAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQEVAKFFKSKPISDS 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1342 1000 ProSiteProfiles Histidine kinase domain profile. 385 675 IPR005467 -
Lele54g1342 1000 Coils Coil 428 448 - -
Lele54g1342 1000 Gene3D - 442 678 IPR036890 -
Lele54g1342 1000 SUPERFAMILY CheY-like 855 992 IPR011006 -
Lele54g1342 1000 Gene3D - 354 441 - -
Lele54g1342 1000 Gene3D - 56 108 - -
Lele54g1342 1000 SMART CHASE_2 105 290 IPR006189 -
Lele54g1342 1000 SMART HisKA_10 378 443 IPR003661 GO:0000155|GO:0007165
Lele54g1342 1000 ProSiteProfiles CHASE domain profile. 105 317 IPR006189 -
Lele54g1342 1000 CDD HisKA 378 439 IPR003661 GO:0000155|GO:0007165
Lele54g1342 1000 FunFam Histidine kinase 4 109 324 - -
Lele54g1342 1000 Gene3D - 694 833 - -
Lele54g1342 1000 Gene3D - 852 998 - -
Lele54g1342 1000 Pfam His Kinase A (phospho-acceptor) domain 378 443 IPR003661 GO:0000155|GO:0007165
Lele54g1342 1000 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 364 444 IPR036097 GO:0000155|GO:0007165
Lele54g1342 1000 Pfam Response regulator receiver domain 858 988 IPR001789 GO:0000160
Lele54g1342 1000 ProSiteProfiles Response regulatory domain profile. 857 992 IPR001789 GO:0000160
Lele54g1342 1000 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310|GO:0016772
Lele54g1342 1000 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310|GO:0016772
Lele54g1342 1000 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310|GO:0016772
Lele54g1342 1000 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310|GO:0016772
Lele54g1342 1000 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 432 670 IPR036890 -
Lele54g1342 1000 CDD HATPase_EvgS-ArcB-TorS-like 495 673 - -
Lele54g1342 1000 Gene3D CHASE domain 109 324 IPR042240 -
Lele54g1342 1000 FunFam Histidine kinase 3 851 996 - -
Lele54g1342 1000 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 989 - -
Lele54g1342 1000 Pfam CHASE domain 108 288 IPR006189 -
Lele54g1342 1000 SUPERFAMILY CheY-like 696 831 IPR011006 -
Lele54g1342 1000 ProSiteProfiles Response regulatory domain profile. 700 830 IPR001789 GO:0000160
Lele54g1342 1000 SMART HKATPase_4 490 675 IPR003594 -
Lele54g1342 1000 CDD REC_hyHK_CKI1_RcsC-like 858 988 - -
Lele54g1342 1000 FunFam Histidine kinase 4 350 441 - -
Lele54g1342 1000 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 490 673 IPR003594 -
Lele54g1342 1000 SMART REC_2 856 988 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1342 Lele-ChrLele54 18462269 18467965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1342 19 1000 Histidine Kinase Gene Family AT2G01830 71.891 0.0 1430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele54g1342 HATPase_c 1.7e-31 CL0025