Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1335 ATGAAGTTCAACATTGCTAATCCCAACACTGGGTGCCAGAAGAAGCTTGAAATTGATGATGATGCTAAACTCCGAGCATTTTGGGACAAGAGGATATCACAAGAAGTCAGTGGAGATGCACTGGGTGAGGAGTTTAAGGGCTATGTTTTCAAAATAACTGGAGGATGTGACAAGCAGGGCTTTCCAATGAAGCAGGGAGTGTTAACTCCTGGCCGTGTTGGTCTCTTGCTGCACAGAGGAACTCCTTGCTTCCGTGGCTATGGCAGAAGGAATGGAGAGAGGAGAAGGAAGTCTGTTCGGGGTTGCGTCGTCAGTCCAGATCTCTCTGTTCTTAACTTGGTTATTGTGAAGAAAGGTGAGAATGATCTTCCGGGATTGACTGACATTGAGAAGCCGAGAATGAGAGGGCCAAAGAGGGCTTCCAAGATTAGGAAATTGTTCAATCTCTCCAAGGAGGATGACGTGCGCAAATATGTCAACACATACCGCAGAACCTTTACGACCAAAGCTGGCAAGAAGGTGAGCAAAGCTCCCAAAATTCAGAGGTTGGTTACTCCCTTGACTTTGCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAGGCTGCTGAATATCAAAAGCTGCTTGCCAGCCGGTTGAAGGAACAGCGTGAACGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCCAAGCTGTCTCATGCATCTAAGCCATCAAGTTTAGTACTGGTGGAAGTTCACTGTATGATCAACTTTCTTTTGAAGTTTTTGTTAAATTTTGTTGCCTCTGGATTGTCTGGTTGATTGTTGGTGGCTCAAGGTTTCAAAACTTCAGAACTTCAAATTTATGACAGTAAGGTTAATAGAGTCGAACTTCTGCGGAAGCACTACTCGTTATCCAACCTAAAAGATGAAGGTATGTGGATCTCTGAGGTGCTTTATCTCTCTTACTATTGTATGTTCTTCCTTGCTTTTGATTCAATTAGGCTTCTAGTTTATACAAAATTGGCTTTAATTTCTTTAGTGTCATGTTTCCTTCTGGAGTTTAAGGGCTATGTTTTCAAAATCACTGGAGGCTGTGACAAGCAGGGTTTCCCAATGAAGCAGGGAGTGCTGACTCCTGGACGTGTTCGTCTCTTGCTTCACAGAGGAACTCCTTGCTTCCGTGGTTATGGCAGAAGGAATGGAGAGAGGAGAAGGAAGTCTGTTCGGGGTTGCATTGTCAGTCCAGACCTCTCTGTTCTTAACTTGGTTATTGTGAAGAAGGGTGAGAATGATCTTCCAGGATTGACTGACATTGAGAAGCCGAGAATGAGAGGGCCAAAGAGGGCTTCCAAGATTAGGAAATTGTTCAATCTCTCCAAGGAGGATGATGTACGCAAATATGTTAACACATACCGCAGAACCTTTACTACCAAAACTGGCAAGAAGGTGAGCAAAGCTCCCAAGATTCAGAGGTTGGTTACTCCCTTGACTTTGCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAGGCTGCTGAATATCAAAAGCTGCTTGCCAGCCGGTTGAAGGAACAGCGTGAGCGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCTAAGCTGTCTCATGCATCTAAGCCATCAGTTACCGCTTAA 1683 0.4522 MKFNIANPNTGCQKKLEIDDDAKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVGLLLHRGTPCFRGYGRRNGERRRKSVRGCVVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSHASKPSSLVLVEVHCMINFLLKFLLNFVASGLSGXLLVAQGFKTSELQIYDSKVNRVELLRKHYSLSNLKDEGMWISEVLYLSYYCMFFLAFDSIRLLVYTKLALISLVSCFLLEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSHASKPSVTA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1335 560 Coils Coil 500 527 - -
Lele54g1335 560 Gene3D - 133 234 - -
Lele54g1335 560 Gene3D - 444 545 - -
Lele54g1335 560 MobiDBLite consensus disorder prediction 529 548 - -
Lele54g1335 560 ProSitePatterns Ribosomal protein S6e signature. 363 374 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lele54g1335 560 MobiDBLite consensus disorder prediction 529 560 - -
Lele54g1335 560 Hamap 30S ribosomal protein S6e [rps6e]. 12 428 IPR020924 GO:0003735|GO:0005840|GO:0006412
Lele54g1335 560 Pfam Ribosomal protein S6e 354 439 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele54g1335 560 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele54g1335 560 PANTHER 40S RIBOSOMAL PROTEIN S6 1 240 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele54g1335 560 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lele54g1335 560 SMART Ribosomal_S6e_2 341 439 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele54g1335 560 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lele54g1335 560 Coils Coil 189 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1335 Lele-ChrLele54 18403079 18407933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1335 355 560 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 67.476 4.39e-82 253