Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1325 ATGACGGCAAGAAATCCGCTCACCAGAGTTGTAGATTCTATTGAACAGGGATGGAAACTATGCTGGGCTGTCCGTGGCTTTGCTGTGTCAGATTTTGCTGCAATGGCTGCTTTGCACAGGGTGACACAGTCAAGCATGACCACCAGTGTGAGCAGCTATGGCACCTGCAAAGGTGGTGGTGCTGCAGCTATTGAGAAGGCAGTTCCTGATAAGTTCCCAGTTGGTCTGAGGGTTCTCGTCGTGGATGATGACATCACTACTTTGAAAATCATTGAACAAATGTCTCTTAAGTGTCATTATCGAGTTACCACATGTTCTGAGGCTACTGTTGCTTTAAATCTTCTACGAGAAAAGAAAGGCTGCTTTGATGTAGTACTGAGTGATGTTTATATGCCTGATATGGATGGGTATAAACTCCTAGAACATGTTGGGCTGGAGATGGATCTTCCTGTTATCATGATGTCTGCTGACGGTAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATTAAGCCTGTTCGTGAGGAGGAATTGAGGAATATATGGCAGCACGTTGTTAGGAAAATGTGGAATGAAAATAAAGAACACGAAAATTCTGGCAGCTTGGAAGATAATGACAGGAATAAACAAGGAAATGATGATACTGAATATGCTTCATCTGTAATTGATGTGGCAGAAGTAGTTAAGGTGCCAAAAAAGAGGATCAGTTCAAAAGAAGATGATGATGGTGAACCGGATAATGATGATCCATCCACATCTAAGAAGCCCCGTGTGGCCTGGTCGGTAGAACTACATCAACAATTTGTCTGTGCTGTGAACCAACTTGGGCTTGACAAAGCTGTACCAAAGAGAATTCTCGAACTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCCAGTCATCTGCAGAAATTTAGGCTTTATTTGAAGAGAATAAGTGGAGTGGCACAGCAACAGAATGGGATTCCAAACACATGCTCTGGGTCTATGGAATCCAGGCTAGGAGGACTTGGAAGGTTAGACATCCAAGCTCTGGCTGCTGCCGGGCAAGTTCCTCCTCAAACACTAGCAGCCCTTCATGCAGAACTCTTAGGTCGTCCAGCCACTAGCTTGGTGTCGACGGTGGACCAGACTGCTCTTCTGCAAGCTTCCATACAGGGTCCCAAGCATTCCCCTGCAGAACATGCTGTGGCATATGGTCAGCCTCTAGTAAAATGTCCTTCCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACCGCGGATGATGCATCTTCAGGCTATGGAGCATGGCCACCATCTGATACAATTGGTTCAATGGGACCCAATAGTAATCATGGAAGAGTGAGTGTTCAAAATAATAACATGATGATGGATATGCTGCAGCACCATCGAAGGCAGCAGTTCCAGCAAACACAGCAGCATAAACTGCAGCAGCAATCGCTGATGCATGATCAAAGTCGTTCACTCAATGTTCAACCATCTTGCCTGGTGTCTCCCTCTGAAACTTCGGGCACTTTCCATGTTAACGGTCCTGCTTCTGTCAACCAGAATTCCAATTTGGCTAGGAATGCCCTTATGGATTATAGTCTCTTTGCACCCCAACGGAATCATCCTTCGTTAAATATTGTTCAATTTCCTGGTGGGGACGCCAAAGCTAAAGGTGTTCTTTGTGGATACGTGGCTCCAGTCTCCATTTCGCATTCAACATCATCACATTCAGTAAGTGCAAACAATAACAATATCCAACAGCTCCACAACTCATCTTTGACATTCGGAACCGTGAGACCTTTGCCAACTCTCTCATCAAATGTGCCTGATACACAAGTTCCCTATGGGGGTACTAAATCTGGTGATGCCATTGATCAAGCACATGTAAGGAATCTTGGATTTGTTGGCCAAGGTAGCAGTATTCCAAGTAGGTTTGCTGCTCATGAAATTGAGTCATCTGTCAGTGACTTAAGTCAGGGAAAAATCCCTCTAGATAGCAATGGTAACACAGTGAAGCAGGAGCCAAACATGGATTTTATGGATAACTCAAAAGTGGGCGCCCCAGTCTTACAAAGATATCCATCTGATCCCATGAATGTGTTCACTGAATAG 2124 0.4459 MTARNPLTRVVDSIEQGWKLCWAVRGFAVSDFAAMAALHRVTQSSMTTSVSSYGTCKGGGAAAIEKAVPDKFPVGLRVLVVDDDITTLKIIEQMSLKCHYRVTTCSEATVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRNKQGNDDTEYASSVIDVAEVVKVPKKRISSKEDDDGEPDNDDPSTSKKPRVAWSVELHQQFVCAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTCSGSMESRLGGLGRLDIQALAAAGQVPPQTLAALHAELLGRPATSLVSTVDQTALLQASIQGPKHSPAEHAVAYGQPLVKCPSNIAKNFPQSILTADDASSGYGAWPPSDTIGSMGPNSNHGRVSVQNNNMMMDMLQHHRRQQFQQTQQHKLQQQSLMHDQSRSLNVQPSCLVSPSETSGTFHVNGPASVNQNSNLARNALMDYSLFAPQRNHPSLNIVQFPGGDAKAKGVLCGYVAPVSISHSTSSHSVSANNNNIQQLHNSSLTFGTVRPLPTLSSNVPDTQVPYGGTKSGDAIDQAHVRNLGFVGQGSSIPSRFAAHEIESSVSDLSQGKIPLDSNGNTVKQEPNMDFMDNSKVGAPVLQRYPSDPMNVFTE 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1325 707 MobiDBLite consensus disorder prediction 201 222 - -
Lele54g1325 707 MobiDBLite consensus disorder prediction 660 686 - -
Lele54g1325 707 PANTHER TWO-COMPONENT RESPONSE REGULATOR 76 448 IPR045279 GO:0009736
Lele54g1325 707 MobiDBLite consensus disorder prediction 660 681 - -
Lele54g1325 707 CDD REC_typeB_ARR-like 78 192 - -
Lele54g1325 707 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 317 IPR017930 -
Lele54g1325 707 SUPERFAMILY Homeodomain-like 258 318 IPR009057 -
Lele54g1325 707 Gene3D - 257 320 - -
Lele54g1325 707 Gene3D - 76 243 - -
Lele54g1325 707 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 261 314 IPR006447 GO:0003677
Lele54g1325 707 SUPERFAMILY CheY-like 75 200 IPR011006 -
Lele54g1325 707 FunFam Two-component response regulator 257 320 - -
Lele54g1325 707 ProSiteProfiles Response regulatory domain profile. 77 192 IPR001789 GO:0000160
Lele54g1325 707 Pfam Myb-like DNA-binding domain 263 311 IPR001005 -
Lele54g1325 707 MobiDBLite consensus disorder prediction 201 219 - -
Lele54g1325 707 PIRSF RR_ARR_type-B 56 696 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele54g1325 707 MobiDBLite consensus disorder prediction 239 261 - -
Lele54g1325 707 SMART REC_2 76 188 IPR001789 GO:0000160
Lele54g1325 707 FunFam Two-component response regulator 76 213 - -
Lele54g1325 707 Pfam Response regulator receiver domain 78 187 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1325 Lele-ChrLele54 18315461 18322635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1325 110 375 Response Regulator Gene Family AT3G16857 55.245 1.42e-93 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele54g1325 Response_reg 2.9e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1325 54 18315461 18322635 Lele55g0127 55 822624 823376 hybridization
Lele54g1325 54 18315461 18322635 Lele56g0129 56 1247654 1254449 hybridization