Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1324 ATGGCGATGGCGAGGGAGATAGAGGAGGAAGGAGACGTACAGAACAACGCAGGCAAGAGGCTGAAATGCATGAAGAATGAGGAGAAGGGTCAACCAGAGGAGGAAGCTGCGGAAGATGAAAGTGAGCTTCCTCTCCAGCCCGGCCTCTTCTTCTATCCAACCACTCCTACGTCTTTCGTTGTCTCCGATGCTCTTGAACCCGATTTTCCCATCATCTATGTCAACAAGGTCTTTGAACTCGTCACCGGCTATCGCGCCGATGAGGTTTTGGGTCGGAACTGTCGGTTCTTACAGTATAGGGACCCTCATGCTCAAAGGAGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGCATTCCTTTAGTGAACAGGCTGAGACTTGCTCCAATTCATGATGATAATGGAACTATGACACATGTAATAGGCATCCAGCTATTTTCTGAAGCAAATATAGATCTAAATCTTGTCTCATATCCGGTGTTCAAGGAGACCTGCAGTCGGGAAATTGACAAGACTGGTAAAAATTCTATTAAGAGTGGACGACCATTATACAGCCAGCACCGAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAGGTCTTGGCTCATAACATCTTATCACGCCTGACACCAAGGGATGTTGCATCGATTGGGTCTGTGTGCAGAAGGATCCGTCAATTAACGCAGAATGAGCATGTTAGAAAGATGGTGTGTCAAAATGCATGGGGAAAAGAAGTGACCGGTGCATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTTAGCCGAGAACTAACCACTCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTAGGAGGTGCAGTAGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATCGCCTTGTATTGTTCGGAGGTGAAGGAGTTGATATGCAGCCTATGGATGACACTTTTGTCCTCAATCTTGATGCTAAAAATCCTGAGTGGCGTAGGATTAGTGTGAAATCATCCCCACCAGGAAGGTGGGGCCACACACTCTCCTGCTTAAATGGTTCTTGGTTGGTGGTATTTGGAGGATGTGGTAGGGAAGGATTGCTTAATGACGTGTTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAAAGAAGTTTGTGGTGGAACTCCGCCTCTCCCTAGATCTTGGCACAGCTCTTGCACTGTTGAAGGGTCTAAATTGGTAGTCTCAGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGATACATACCTACTGGACCTTACTACGGATAATCCAACATGGAGAGAAATTCCAACTTCTTGGGCTCCTCCTTCTCGATTGGGGCACTCGCTCTCTGTATATGGAAGGACAAAAATTCTCATGTTTGGTGGACTTGCCAAGAGCGGACACTTGCGATTACGATCAGGGGAGGCTTATACAATTGACTTGGAAGATGAAGAGCCTCAGTGGAGGCAGCTAGAATATAGCGCATTCTCTGGAATGGGTGCTCAAAGTGCTGTTGTTCCTCCACCTCGGCTAGATCATGTCTCAGTGAGCATGCCTTGTGGGAGGATCATTATTTTTGGAGGCTCCATTGCAGGGCTTCACTCTCCATCCCAGCTCTTTCTTTTGGACCCATCTGAGGAGAAACCATCATGGAGGATCCTCAATGTGCCGGGGCAACCCCCAAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTTTTGGGTGGACATACAGGGGAGGAGTGGATACTTAATGAGTTGCATGAGTTATGCTTAGCAAGCAAGCAGGACTCCGACCTAAGGTGA 1890 0.4757 MAMAREIEEEGDVQNNAGKRLKCMKNEEKGQPEEEAAEDESELPLQPGLFFYPTTPTSFVVSDALEPDFPIIYVNKVFELVTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGIPLVNRLRLAPIHDDNGTMTHVIGIQLFSEANIDLNLVSYPVFKETCSREIDKTGKNSIKSGRPLYSQHREMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTQNEHVRKMVCQNAWGKEVTGALELMTKKLGWGRLSRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTVEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLEYSAFSGMGAQSAVVPPPRLDHVSVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASKQDSDLR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1324 629 Pfam Kelch motif 533 580 IPR011498 GO:0005515
Lele54g1324 629 Gene3D - 512 628 IPR015915 GO:0005515
Lele54g1324 629 FunFam Putative LOV domain-containing protein 286 491 - -
Lele54g1324 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 166 IPR035965 -
Lele54g1324 629 Gene3D - 208 259 - -
Lele54g1324 629 Pfam Galactose oxidase, central domain 309 359 - -
Lele54g1324 629 MobiDBLite consensus disorder prediction 1 32 - -
Lele54g1324 629 Pfam PAS domain 65 165 IPR000014 -
Lele54g1324 629 CDD PAS 55 165 IPR000014 -
Lele54g1324 629 MobiDBLite consensus disorder prediction 1 42 - -
Lele54g1324 629 TIGRFAM sensory_box: PAS domain S-box protein 70 165 IPR000014 -
Lele54g1324 629 FunFam Adagio protein 1 48 177 - -
Lele54g1324 629 Pfam Galactose oxidase, central domain 374 420 - -
Lele54g1324 629 Pfam Galactose oxidase, central domain 423 474 - -
Lele54g1324 629 Gene3D PAS domain 52 177 - -
Lele54g1324 629 FunFam Putative LOV domain-containing protein 492 624 - -
Lele54g1324 629 SUPERFAMILY Galactose oxidase, central domain 296 613 IPR011043 -
Lele54g1324 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 40 622 - -
Lele54g1324 629 Pfam F-box domain 215 252 IPR001810 GO:0005515
Lele54g1324 629 ProSiteProfiles PAS repeat profile. 71 102 IPR000014 -
Lele54g1324 629 Gene3D - 288 511 IPR015915 GO:0005515
Lele54g1324 629 SUPERFAMILY F-box domain 207 267 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1324 Lele-ChrLele54 18309408 18313052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1324 54 167 AGC Kinase Gene Family AT5G58140 42.982 1.13e-21 98.2