Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1320 ATGTCGTCGGAAAGTTCTCCCACGTCGGCTGCTGAGCCCCACGCGCCTCTCCTTCGTTCCCGCCAGGGATCTTCTGATGCCCCCAGGACTCCTACCCTTGCGCTCCTTCTCGGCCGCGCCGTTGGCCGTCGGGGACCCTCCATGCTCGTGCGGGAGACGGCGGCTCGCGAGCTGGAGGAGCGGAGGGCGGATTGGGGCTACTCGAGGCCTGTTGTTATTCTCGACATCACGTGGAATATGGCGTTTGTGGCTGTGTCGATCGTGATGCTTCTTTTGACGACCAGCGAGAAGCCTAACACGCCGATCCGGGTCTGGATCTGTGGGTACGCTGCGCAGTGCTTGGTTCATGTGGTGCTCGTGTTGCTCGAGTATAGGAGGAGGACTAGGAGGGAGGCTTCGCGGATGCGGAGGGCTCAGGATGGGGATATTGAAGCTCATAATACCGAGGATATCAACGACAGTGAGGACGAAGAAACTGGAGATGGGAGTTCATTGAGTTCGTCTCGCGCTGGATTCACGAAACGATGTGAATCGGTAAATACCATGGTTTCATTCCTTTGGTGGATAGTTGGCTTTTATTGGGTGATCTCAGGTGGCGAAACTCTTCTGCAAGATGCTCCGCGTTTGTATTGGTTGGCTGTTGTTTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTTTTGGCCTGCTTGATTGGTATTGCCCTCTGTTGTTGTTTGCCATGCATCATTGCTATTCTCCACGCAGTTGCTGGACAGGAAGGGGCATCTGAAGCAGATCTTAGCCTACTGCCGAAATATAGATTTCACATGCTAAATAATGAGGAAAAGCCTACTGGTGGAGCAGGATCAATGGTTCCTTTAGAGACGAGTAGTGGGTACCTGGCAAATGAAAGAATACTTCTACCTGAAGATGCGGAATGCAGTATATGTCTCACTTCATACGAGGATGGAGCAGAACTCAATGTTCTCCCCTGCAACCATCATTTCCATTCTACATGCATTGTGAAATGGTTGAAACTGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTTAAGGGAAATGAACAGGCGTGA 1086 0.5092 MSSESSPTSAAEPHAPLLRSRQGSSDAPRTPTLALLLGRAVGRRGPSMLVRETAARELEERRADWGYSRPVVILDITWNMAFVAVSIVMLLLTTSEKPNTPIRVWICGYAAQCLVHVVLVLLEYRRRTRREASRMRRAQDGDIEAHNTEDINDSEDEETGDGSSLSSSRAGFTKRCESVNTMVSFLWWIVGFYWVISGGETLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILHAVAGQEGASEADLSLLPKYRFHMLNNEEKPTGGAGSMVPLETSSGYLANERILLPEDAECSICLTSYEDGAELNVLPCNHHFHSTCIVKWLKLNATCPLCKYNILKGNEQA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1320 361 MobiDBLite consensus disorder prediction 1 29 - -
Lele54g1320 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 359 IPR013083 -
Lele54g1320 361 SUPERFAMILY RING/U-box 298 355 - -
Lele54g1320 361 SMART ring_2 310 350 IPR001841 -
Lele54g1320 361 CDD RING-H2_PA-TM-RING 309 351 - -
Lele54g1320 361 MobiDBLite consensus disorder prediction 146 169 - -
Lele54g1320 361 ProSiteProfiles Zinc finger RING-type profile. 310 351 IPR001841 -
Lele54g1320 361 PANTHER TARGET OF ERK KINASE MPK-1 40 359 - -
Lele54g1320 361 FunFam E3 ubiquitin protein ligase RIE1 290 358 - -
Lele54g1320 361 Pfam Ring finger domain 309 351 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1320 Lele-ChrLele54 18289161 18292555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1320 1 360 C3H Transcription Factor Family AT1G68070 68.056 2.43e-180 501