Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1319 ATGGCTGGGAAGGTCGGCGATTTTGTGTACAGAATCAATAAAGCAGGAGAGTGGGAAGAGTTGCAGAAGAATGGGTCGGTTTTCGGTGGAGAGTTTGATAGGTCTTCTGGTTTCATCCATCTCAGCAAGCTGGATCAGAATTGGATGTCTTATTTGGGCATGGCGCGAAAGGCAACTGAATCCCTTGGGCAAGATGCATCCCAGAAGGGAACTATCACTATGGAGAACAATACAAGTAATGAAGCCAAGAAACTTGCTGCTGCTGCTCTTGCAGCCGTTAAAGATGATATTGCCGCTGCTGCATCAGGCAGAGGGAAAATTGCTTGTGGACTACCTGAATTATATCAGGCAGTTTTGAAAGAATTTCAGAAGGCACAGCAGCTTGCAGCCACAAGGGAGACAACATACACTCTTTTCATTTCACAAGCAAGTCTTCCTTCCAGTTATACAGCCAGTGAGGTGGATGTTAGTTCTGATAAGGCTGCAGAACAGGAGTTGGCCTCAAGACTGATGCAGATTTGCCTTTTATTGTTCTGCAGGCAAGAGGTGTTATTATTGGATAATGAGATTGCCTTCAATGAAGCTATAATTGAGGAACGTGAGCATGGCATTCAAGAAATCCAACAACAAATTGGTGAAGCAAACGAGATTTTTAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCCATGATTGATTATATTGGATCCAATATTGAAGCCTCCCATGCGGCAACTTCAGAAGCAAAAACTCAACTTGTGAAAGCTGCAAAGACCCAAAGATCAAATTCGTCTCTGATCATCCGTGTCAAGTCTAAAGACGGGTCTACCAAAATTCTGCTCGTGATTCAGTTTCAAGACAGTTTTTACACTCTGCATTCGGAATATGAAAGTAATCTTAGCAACCAGAAAGCAACAGAGGAGGAAGAAAGGCTGAAGACTGATGTGTCTGACCCATTTGCTGATTCAGATACAGAGTTGGACCTCAAGCTCTTCGGCTGCTGCTTTACTAAGTGCTGTGTGGATTTTATCGGCATGTCTTGGGAGGACGAGATTGTGATGCGTGATGTTACAAATGCGGGTCTCGTTGTGAGTGATCGCATTGGGCGAGAAGTTGCGTCGCAACTCGACCTCGAAGAATCGCTAGAAGCCTCCAGATATGCTAGTCATCCATATTCAGCTCACCCCAAAGAGTGGCCCTCTTTAGTTGAGGTAGTGGATACACGGGAGTTGCCTCCTGTGCTCATTGAGAGATACAATGCAGCTGGTGGGGAAGGAACTGCTTTATGTGGAATATTTCCTGAAATTCGTCGGGCATGGGCATCTGTGGACAATTCCTTGTTTCTTTGGCGTTTTGATAAGTGGGATGGCCAATGTCCTGAATATAGCGGGGAGGAACAAGCTATTTGTGCTGTTGGTCTGTCAAAATCAAAGCCAGGTGTCTTTGTTGAAGCTATCCAATATCTTTTAATTTTGGCAACACCAGTGGAGTTGATTTTAGTAGGAGTGTGCTGCTCTGGAGGAACTGATGGCTCAGATCCATTTTCTGAAGTTTTATTACAGCCTTTGCCTGATTATACAGTACCATCTGATGGTGTCACAATGACTTGTGTGGCATGTACTGATAAGGGTCGTATTTTCCTTGGTGGTCGTGATAGCCATATATATGAGCTCCTTTATTCCACTGGCTCAGGCTGGCAAAAACGTTGTAGAAAAATCTGCCTCACTGCTGGTTTGGGAAGCGTGATATCAAGATGGGTTATACCAAATGTATTTAATTTTGGAGCTGTTGACCCCATTGTTGAAATGGTTTTTGATAATGAGAGGCAAATATTGTATGCACGAACTGAAGAAATGAAGCTTCAGGTTTATGTTCTTGGACCTAATGGTGATGGTTCATTAAAGAAAGTGGCTGAAGAAAGGAATCTTGTCAGTCAGAGGGATGCACATTATGGAGGTAGACAATCAACAGGACCAAGAAACTCAAGTCGATCACCAAAGCCATCTATTGTTTGCATCTCACCTTTGTCTACACTTGAATCAAAGTGGCTACATCTTCTTCTTGTTCTATCAGATGGTAGAAGGATGTACCTATCTACCTCTCCTTCTAGTGGAAGCTTGAGTGGGTTCAACACTAACCATCATAAACCAAGCTGCTTAAAGGTTGTCACAACAAGGCCTGCTCCTCCTTGGGGCGTTAGTGGCCTCGCCTTTGGAGCCACATCTCTTGCAAGTAGACCTCAAAATGAGGATCTCTCCCTAAAAGTTGAGTCAGCCTATTATTCTGCTGGTACTCTTGTCCTTTCTGATGCATCCCCACCAAGTATGTCTTCACTCCTTGTTTTGAACAAAGATTCAAGCACACAGTCATCTATATCAGGAAATTTAGGGACGAGTACGAGGAGTTCTCGAGCATTGCGGGAATATGTATCTTCTTTACCAGTTGAAGGTCGAATGCTTTTTGTGGCAGATGTCTTACCCTTGCCAGATACTGCATCTACAGTTCAATCCCTATATTCAGAAATAGAGTTTGGTGGATATGAGAACTCGGTTGAGTTATGTGAAAGGGCTTCTGGCAAACTTTGGGCAAGGGGTGACCTCTCAACCCAACATATATTGCCAAGGAGGAGAATTGTCATCTTTAGCACTGTGGGAATGATGGAAATAGTTTTTAATAGGCCAGTGGACATTCTAAGATGGTTGTTTGAGTCTAACTCTCCAAGATCAATTTTAGAAGATTTCTTTAATCGTTTTGGTGCTGGCGAGGCAGTTGCTATGTGTCTAATGCTAGCTGCAAGAATAGTGCCTTCAGAAAATCTTATTAACAATACTGTTGCTGGAAAGGCAGCTGATGCTTTTGAGGACTCAAGACTTGTTGGAATGCCACAACTTGAAGGTACTAGTGGATTATCAAATACAAGAACTGCAGCTGGTGGATTCAGCATGGGCCAGGTTGTCCATGAGGCTGAGCCAGTGTTTTCAGGTGCGCATGAAGGGCTCTGCTTGTTTTCAACTAGGTTACTTTTTCCAGTGTGGGAACTTCCTGTATTGGTTGTAAAAGGCACCTTAGGTCGTTCAGGCACTTTGGCAGAGAATGGGGTTGTTGTTTGCAGACTCTCTATTGGGGCTATGCAAGCCCTTGAGCACAGAATCCGATCCTTAGAGAAATTCTTACGATCTAGAAGGAACCAGAGGAGGGGACTTTATGGTTGTGTTGCAGGATTAGGAGATCTAAGTGGTTCCATTCTATATGGTAATGGTTCTACATTAGGTGCTGATGATCGGAATATGGTAAGAAACTTATTCGGTGCATATTCAAGAAATATGGAATCTAGTAGTGGTGGAACATCCAATAAAAGGCAAAGATTGCCATATAGTCCTGCAGAATTGGCTGCCATGGAGGTTAGGGCATTGGAATGCATTAGGCAGTTACTTCTTAGATCTGGTGAAGCACTGTTTTTGCTCCAACTTCTTTCTCAGCATCATGTAACCCGGTTGGTTCAGGGATTTGATAGCAACCTGCAGGAGGCACTAGTTCAATTAACATTTCATCAACTTGTTTGTTCTGAAGACGGTGATCGTCTTGCCACAAGACTTATATCTGCTCTAATGGAGTATTATACTGGTCCTGATGGCAGGGGAACTGTAGATGATATTAGTGGGAGATTAAGAGAGGGTTGTCCAAGCTACTATAAGGAGTCTGATTACAGCTTCTTCTTAGCTGTGGAAGCTTTGGAGAGAGCTGCTGTGACTGTAGATGTTCAAGAAAAGGAGAATCTGGCAAGGGAAGCATTCAATCTCTTAAGTAAAGTTCCAGAGTCTGCTGACTTACGGACTGTTTCAAAACGATTTGAGGATTTAAGATTTTATGAAGCCGTGGTGCGCTTACCTCTTCAAAAGGCACAGGCTCTAGACCCTGCAGGTGATGCTCATAATGATGAAATTGATGCAACTGTCAGAGAACAAGCACTTGCAAAGCGTGAACAATGTTATGAAATAATTATAAATGCTTTGCGGTCTCTAAAGGGAGGCGCCCCACAGAAGGAATTTGGTTCCCCCATCAGATCTGCTGCTTCGCAATCCACTCTTGATCCAGCCTCCCGGAAAAAATATATATGTCAGATAGTTCAACTTGGTGTCCAGTCGCCTGATCGAATATTCCATGAGTATTTATACCAGGCTATGATTGATTTGGGTCTTGAGAATGAGTTGTTAGAGTATGGTGGTCCTGATTTGCTGCCCTTTTTGCAAAGTGCTGGTCGTGAAGCTACACAAGAGGTTCGTACTGTGTCCACCACAACTTCTCCCCCGAGGCAATCAGGGGCACCTATGTCATCTAATCAAATCAAGTACTATGAACTTTTGGCACGGTATTATGTCTTGAAGCGGCAACATATGCTGGCAGCTCATGCATTGCTAAGACTAGCTGAGAGGCGTTTTGTTGATGGTGTTCCTACTTTGGAACAGAGGTGCCAATACCTGAGTAATGCAGTTTTACAGGCAAAGAGTGCTAGTAACAGTGATGGCTTGGTTAGCTCTGGTCGGAGTTCCGTCGACAGTGGATTCCTAGATTTGCTTGAAGGGAAGCTTGCTGTTCTTCAGTTTCAAATAAAAATCAAAGAGGAATTGGAGGCTTTTGCATCCAGATCAGAGGTTTTGCCCGCCCTGTCTGATTCTGTCCCAAATGGTTTAGTTCCTGAAATGAGTAACACTGCTGATGCTGATATTGCGAATGTGGCACGAGAGAAAGCCAAAGAGCTATCATCAGATGTAAAGAGTATAACAAAATTATATAATGAATATGCTGTTCCTTTTGAGCTCTGGGAGATATGCCTGGAGATGCTGTATTTTTCCAATTATTCCAGCGATGCTGACAGCAACATTTTAAGAGAAACTTGGGCTAGACTTATTGATCAAGCTCTTTCAAGAGGTGGCGTTGCTGAAGCCTGCTCTGCACTCAAAAGGGTTGGTCCACGCATTTATCCAGGCGATGGAGCTGTTATACCACTTGAGACGATCTGTCTTCACCTAGAGAAAGCTGCACTGGAGAGGTGGAGTTCAGGTGCTGAATCCGTGGGAGATGAAGATGTTGCAAGAGCCCTTCTTTCTGCTTGTAAAGGTGCTCCTGAACCAGTGTTAAACACATATGATCAATTGTTATCAAGCGGGGCTATTTTGCCTTCGCCAAACCTAAGACTAAGGTTGCTGAGATCAGTACTAGTGGTACTTCGTGAGTGGGCAATGTCTGTAGTTGCACAGAGGATTGGTACAAGTACCGCCGGCGCTTCCTTAATGCTAAGTGGAGGATTCTCATTGGAGAGAACGGTTGTTAACCAAGGAGTTCGGGATAAGATTGCTAGCGCGGCAAACAGGTATATGACTGAAGTGCGAAGACTGGCCCTTCCACAGAGTCAGACGGAAGTTGTTTACAGAGGCTTTAAAGCACTTGAAGAATCACTCATAAGTCCTTATTCTTTTGATCGCTTTTGA 5490 0.4381 MAGKVGDFVYRINKAGEWEELQKNGSVFGGEFDRSSGFIHLSKLDQNWMSYLGMARKATESLGQDASQKGTITMENNTSNEAKKLAAAALAAVKDDIAAAASGRGKIACGLPELYQAVLKEFQKAQQLAATRETTYTLFISQASLPSSYTASEVDVSSDKAAEQELASRLMQICLLLFCRQEVLLLDNEIAFNEAIIEEREHGIQEIQQQIGEANEIFKDLAVLVHEQGAMIDYIGSNIEASHAATSEAKTQLVKAAKTQRSNSSLIIRVKSKDGSTKILLVIQFQDSFYTLHSEYESNLSNQKATEEEERLKTDVSDPFADSDTELDLKLFGCCFTKCCVDFIGMSWEDEIVMRDVTNAGLVVSDRIGREVASQLDLEESLEASRYASHPYSAHPKEWPSLVEVVDTRELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLSKSKPGVFVEAIQYLLILATPVELILVGVCCSGGTDGSDPFSEVLLQPLPDYTVPSDGVTMTCVACTDKGRIFLGGRDSHIYELLYSTGSGWQKRCRKICLTAGLGSVISRWVIPNVFNFGAVDPIVEMVFDNERQILYARTEEMKLQVYVLGPNGDGSLKKVAEERNLVSQRDAHYGGRQSTGPRNSSRSPKPSIVCISPLSTLESKWLHLLLVLSDGRRMYLSTSPSSGSLSGFNTNHHKPSCLKVVTTRPAPPWGVSGLAFGATSLASRPQNEDLSLKVESAYYSAGTLVLSDASPPSMSSLLVLNKDSSTQSSISGNLGTSTRSSRALREYVSSLPVEGRMLFVADVLPLPDTASTVQSLYSEIEFGGYENSVELCERASGKLWARGDLSTQHILPRRRIVIFSTVGMMEIVFNRPVDILRWLFESNSPRSILEDFFNRFGAGEAVAMCLMLAARIVPSENLINNTVAGKAADAFEDSRLVGMPQLEGTSGLSNTRTAAGGFSMGQVVHEAEPVFSGAHEGLCLFSTRLLFPVWELPVLVVKGTLGRSGTLAENGVVVCRLSIGAMQALEHRIRSLEKFLRSRRNQRRGLYGCVAGLGDLSGSILYGNGSTLGADDRNMVRNLFGAYSRNMESSSGGTSNKRQRLPYSPAELAAMEVRALECIRQLLLRSGEALFLLQLLSQHHVTRLVQGFDSNLQEALVQLTFHQLVCSEDGDRLATRLISALMEYYTGPDGRGTVDDISGRLREGCPSYYKESDYSFFLAVEALERAAVTVDVQEKENLAREAFNLLSKVPESADLRTVSKRFEDLRFYEAVVRLPLQKAQALDPAGDAHNDEIDATVREQALAKREQCYEIIINALRSLKGGAPQKEFGSPIRSAASQSTLDPASRKKYICQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGREATQEVRTVSTTTSPPRQSGAPMSSNQIKYYELLARYYVLKRQHMLAAHALLRLAERRFVDGVPTLEQRCQYLSNAVLQAKSASNSDGLVSSGRSSVDSGFLDLLEGKLAVLQFQIKIKEELEAFASRSEVLPALSDSVPNGLVPEMSNTADADIANVAREKAKELSSDVKSITKLYNEYAVPFELWEICLEMLYFSNYSSDADSNILRETWARLIDQALSRGGVAEACSALKRVGPRIYPGDGAVIPLETICLHLEKAALERWSSGAESVGDEDVARALLSACKGAPEPVLNTYDQLLSSGAILPSPNLRLRLLRSVLVVLREWAMSVVAQRIGTSTAGASLMLSGGFSLERTVVNQGVRDKIASAANRYMTEVRRLALPQSQTEVVYRGFKALEESLISPYSFDRF 1829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1319 1829 FunFam Nuclear pore complex protein NUP155 1238 1398 - -
Lele54g1319 1829 FunFam Nuclear pore complex protein NUP155 1524 1760 - -
Lele54g1319 1829 MobiDBLite consensus disorder prediction 649 668 - -
Lele54g1319 1829 FunFam Nuclear pore complex protein NUP155 1401 1498 - -
Lele54g1319 1829 Gene3D Protein of unknown function DUF952 7 53 - -
Lele54g1319 1829 SMART tSNARE_6 189 256 IPR000727 -
Lele54g1319 1829 SUPERFAMILY ADP-ribosylation 8 47 - -
Lele54g1319 1829 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 357 1821 IPR004870 GO:0005643|GO:0006913|GO:0017056
Lele54g1319 1829 Gene3D - 875 1227 - -
Lele54g1319 1829 MobiDBLite consensus disorder prediction 645 668 - -
Lele54g1319 1829 Gene3D - 1237 1398 IPR042533 -
Lele54g1319 1829 CDD SNARE_Qa 197 255 - -
Lele54g1319 1829 Pfam Nup133 N terminal like 399 853 IPR014908 -
Lele54g1319 1829 Gene3D - 1524 1783 IPR042538 -
Lele54g1319 1829 Gene3D - 198 265 - -
Lele54g1319 1829 Gene3D Nucleoporin, helical domain, central subdomain 1401 1498 IPR042537 -
Lele54g1319 1829 SUPERFAMILY t-snare proteins 115 249 IPR010989 GO:0016020|GO:0016192
Lele54g1319 1829 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 194 256 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1319 Lele-ChrLele54 18270650 18287562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1319 83 266 SNARE and Associated Proteins AT5G46860 58.919 1.30e-55 193