Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1313 ATGGCTACTCATTGTCGCCCGCGTAATGCTATCCGTTTCTTCAAGATTATTCTCGAATATTCTCTTCAAGAAGGAAAACTTAAAGTACCGGACAGCTTTATACGAAAATATGGAGGTGGCATGCCAAATCCAGTGTTTCTGAAGCCTCCAGATGGGACTCAATGGGAAATACATTGGACAAAATATGAAAGTGGTGAGGTTTGGTTTGAGAAGGGTTGGGATGAAGTTGTTAGATACTACTCATTAGGTCATGGCCATTTGGTGGTGTTCAGATATGAGGGAACTAGAACTACTTGTTACTTTGAGGTCAACATTTTTGACAAGAGTGCATTAGAAATAGACTACCCTCTTCATACAAACCTCCAACAAATTAATGATGATTCTGATTCTGTTGAAATCTTGCATGAGAAACCTCCTGTGCATAAAATAACTAGCAAAAAACCGCCACTATCATCTTCTAGTCGCCCTTGCAAGAAAATTAGAGCTGGGGAAGCTGAAAGGATGTCTAATCAGCAAAAGATGCACTCAGATGGAAATAAGCTGAAGTCCATTAAAGTAGAACCGTATCTTATCAAGCTTGAATCAGAAGAATCCGTGGGTAGAAGCAATTTTTCCACTAAAAGAAGTTCAAAATCCATGGCTATCAAAAAACGAAAGGAGAAACCATTAGCTTGTGATGAGAAGAACAGAGCTTTACAGAGAGTCAACATTTTCACGCCCAAAAATCCCTATTTCAAAATTGTCATGCAGCCAGCATACATCAGGAGCGATCTGTCGGTACCAGCAAGTTTTGTGAAACAGTATTTGAAGCAGAAGGAGGAAGGAGATGCCCTTCTCCGGGTTTCAGATGGTAGAACATGGCGTGTAAAGTGCAATAGGCAAGAAGGAAATCAGCACAGGTTCCGACTCAGGAGTGGGTGGCACTCTTTTGCAAAAGACAATAACTTGAATGTGGGTGATGTGTGTGTTTTTGAACTCACAAACCCCGTAGACATCTCCTTCATAGTTCATGTCTTTGGAGATTCTGCGACTCCATATGGCTGA 1044 0.4109 MATHCRPRNAIRFFKIILEYSLQEGKLKVPDSFIRKYGGGMPNPVFLKPPDGTQWEIHWTKYESGEVWFEKGWDEVVRYYSLGHGHLVVFRYEGTRTTCYFEVNIFDKSALEIDYPLHTNLQQINDDSDSVEILHEKPPVHKITSKKPPLSSSSRPCKKIRAGEAERMSNQQKMHSDGNKLKSIKVEPYLIKLESEESVGRSNFSTKRSSKSMAIKKRKEKPLACDEKNRALQRVNIFTPKNPYFKIVMQPAYIRSDLSVPASFVKQYLKQKEEGDALLRVSDGRTWRVKCNRQEGNQHRFRLRSGWHSFAKDNNLNVGDVCVFELTNPVDISFIVHVFGDSATPYG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1313 347 CDD B3_DNA 243 339 IPR003340 GO:0003677
Lele54g1313 347 CDD B3_DNA 12 107 IPR003340 GO:0003677
Lele54g1313 347 ProSiteProfiles B3 DNA-binding domain profile. 243 342 IPR003340 GO:0003677
Lele54g1313 347 SUPERFAMILY DNA-binding pseudobarrel domain 238 340 IPR015300 -
Lele54g1313 347 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Lele54g1313 347 MobiDBLite consensus disorder prediction 202 222 - -
Lele54g1313 347 Gene3D - 6 110 IPR015300 -
Lele54g1313 347 SMART B3_2 244 342 IPR003340 GO:0003677
Lele54g1313 347 SMART B3_2 13 109 IPR003340 GO:0003677
Lele54g1313 347 Pfam B3 DNA binding domain 15 108 IPR003340 GO:0003677
Lele54g1313 347 Pfam B3 DNA binding domain 245 339 IPR003340 GO:0003677
Lele54g1313 347 ProSiteProfiles B3 DNA-binding domain profile. 12 109 IPR003340 GO:0003677
Lele54g1313 347 Gene3D - 223 342 IPR015300 -
Lele54g1313 347 PANTHER B3 DOMAIN-CONTAINING 9 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1313 Lele-ChrLele54 18244582 18246044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1313 13 339 B3 DNA Binding Superfamily AT3G18990 29.191 6.78e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele54g1313 B3 5e-20 CL0405