Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1311 ATGGCATCACTCGTAAAGACAGCTTTTGACTTTCGACGTAAGCGCGTTCAGATATTGCGACAACCTTACAATTTGGGAATCCTCCTCAGGCCACCAAAATCCTCAATGGTTGTTGGAAAAGATGGACAATATGATGGAATAGAGTTCTGTGACAATATGATCCATGTTCAGGCCCATGAAACAAGCTATCAAACTAATACAGAGGCCCTCGGCACGGCTTTCCTTATCCCCCGCCCTAGGGCGGATGTTGAGGCCGATGTCGCCCCAGGAGTGCCAAAGAAGAGAACGTTCAAAAAGTTCAGCTTCAGAGGCGTTGATTTGGACGCTCTTCTGGACATGTCCACTGATGAGCTTGTCAAGCTCTTCACTGCCCGAGCTCGCAGAAGGTTTCAGAGAGGACTGAAGAGGAAGCCTATGGCCTTGATTAAGAAGCTGCGCAAAGCGAAAAGGGAGGCTCCACCAGGTGAAAAGCCAGAACCTGTTCGCACCCACCTGCGGAACATGATCATTGTACCTGAGATGATTGGGAGCATAATTGGAGTGTACAATGGCAAGACTTTCAACCAGGTTGAAATCAAACCTGAGATGATTGGCCATTACTTGGCTGAGTTCTCAATTTCATACAAGCCTGTCAAGCACGGTAGACCTGGTATTGGTGCCACCCACTCATCAAGGTTTATTCCTCTCAAGTGA 693 0.4805 MASLVKTAFDFRRKRVQILRQPYNLGILLRPPKSSMVVGKDGQYDGIEFCDNMIHVQAHETSYQTNTEALGTAFLIPRPRADVEADVAPGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1311 230 SUPERFAMILY Ribosomal protein S19 134 214 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lele54g1311 230 ProSitePatterns Ribosomal protein S19 signature. 183 207 IPR020934 GO:0003723
Lele54g1311 230 PRINTS Ribosomal protein S19 family signature 163 182 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele54g1311 230 PRINTS Ribosomal protein S19 family signature 195 210 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele54g1311 230 PRINTS Ribosomal protein S19 family signature 183 195 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele54g1311 230 Hamap 30S ribosomal protein S19 [rpsS]. 126 219 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele54g1311 230 FunFam 40S ribosomal protein S15 87 230 - -
Lele54g1311 230 TIGRFAM uS19_arch: ribosomal protein uS19 97 230 IPR005713 GO:0003735|GO:0006412|GO:0015935
Lele54g1311 230 Pfam Ribosomal protein S19 128 213 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lele54g1311 230 Gene3D 30s Ribosomal Protein S19; Chain A 89 230 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lele54g1311 230 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 90 230 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1311 Lele-ChrLele54 18235941 18239271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1311 81 230 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.667 1.33e-89 259