Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1304 ATGGACGACATGAAGGATAAATTAAAAGGTTTCATGAAGAAAGTCTCTCAATCACCCTCCGGTAAATTCAGGGGCCAAGGAAGAGTTCTGGGATCATCCCCATCCTCATCTTCTGCATCCGGCAGTTCTATTCTCCGTCCTATGCAGAATTTGGGTCCAAAACCAAGTTCTGCATCGGCGAACTCGCAACCGTTGCCCCAGAAAACGATCGATTTGGAGTCAAATAGGAAGGAAGGTTCAAGTAAGTCCATCACTGATCGCAAACCGGGCAACGGGTTCGACCCTTATGATTCATTGATAACTACTGGGAAGAGATCTAAAAAAGGGTTTTCTTTGAATGTGTATGAATGTCCCATTTGTGGGGAATCGTTTAGTTCCGAGGAAGAGGTGTCTATACATGTGGATACATGTCAGGGTAACCCAGTTGACCGTGATGACGGAAATGGTGTTTCACAATTACCTGACAATGGAGTTCAGTTAAGAGGTGAATTGGAGGCTTGCATCCGTACCTATATGTCAGGGAAGCCATCTGAGGGTTCAGTTGGAATTGTTCTCAAACTGTTGAGGAATATTGTAAAGGAACCAGATAACGCAAAGTTTAGGAAAATTAGGTTGACTAATCCAAAGATAAAAGAGGCTGTTAGTGAGGTTGCAGGAGGAATTGAGCTGCTGAGCTTTGTAGGATTTGAGCTAAAGGAGGAGGATGGAGAGAGATGGGCACTGATGGAAGTTCCTACAGAAGAGCAAATAAAATTGATCAAGAAAGTAATAGCATTATTGGAATCACCAGTACTACAAGAACCAGGAAAGAGAGAAAGTTTGGCATCTGAAACATGTGCTGAGATGGATGAAGAGGCAGAACCTAAAAGGGTGGACAGACAGGTAAAGGTCTTCTTCTCTGTACCAGAAAGCATTGCATCAAAGATTGAGCTACCAGATTCTTTCTATAACCTTTCAATTGACGAGGTGAAAAGAGAAGCTGAATTGAGGAGGAAAAAACTGGCAGATTCTCAGCTTTTAATCCCCAAGTCGCTAAAAGAAAAGCAAGCAAAAGCCGCTAGGAGGAGATACAGAAAAACTATGATTCGTATCCAGTTTCCAGATGGAGTGGTGCTTCAAGGTGTATTTAATCCATGGGAATCAACAACTGCTTTATATGAGTTTGCCAGCTCCGCATTGAAAGAACCATGTTTGGAATTTGACCTAATGCATCCTGTACTTGTTCAACGACGGGTCATCCCTCACTTCCCTCGAGCAGGGGAGAAAGCTGTAACACTAGAGGATGAGGACCTGGTGCCTTCAGCTCTTATTAAGTTGAAACCTCATGAAACGGATTCTGTTGTTTACACTGGCCTCAGAAATGAATTGCTTGAAATCAGTGAACCGCTCTCATGA 1395 0.4315 MDDMKDKLKGFMKKVSQSPSGKFRGQGRVLGSSPSSSSASGSSILRPMQNLGPKPSSASANSQPLPQKTIDLESNRKEGSSKSITDRKPGNGFDPYDSLITTGKRSKKGFSLNVYECPICGESFSSEEEVSIHVDTCQGNPVDRDDGNGVSQLPDNGVQLRGELEACIRTYMSGKPSEGSVGIVLKLLRNIVKEPDNAKFRKIRLTNPKIKEAVSEVAGGIELLSFVGFELKEEDGERWALMEVPTEEQIKLIKKVIALLESPVLQEPGKRESLASETCAEMDEEAEPKRVDRQVKVFFSVPESIASKIELPDSFYNLSIDEVKREAELRRKKLADSQLLIPKSLKEKQAKAARRRYRKTMIRIQFPDGVVLQGVFNPWESTTALYEFASSALKEPCLEFDLMHPVLVQRRVIPHFPRAGEKAVTLEDEDLVPSALIKLKPHETDSVVYTGLRNELLEISEPLS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1304 464 Gene3D - 349 442 - -
Lele54g1304 464 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 463 - -
Lele54g1304 464 SMART PGNneu 179 246 - -
Lele54g1304 464 ProSiteProfiles UBX domain profile. 355 439 IPR001012 GO:0005515
Lele54g1304 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Lele54g1304 464 Pfam PUB domain 180 253 IPR018997 -
Lele54g1304 464 SUPERFAMILY Ubiquitin-like 327 439 IPR029071 -
Lele54g1304 464 MobiDBLite consensus disorder prediction 1 98 - -
Lele54g1304 464 Gene3D - 173 261 - -
Lele54g1304 464 MobiDBLite consensus disorder prediction 19 70 - -
Lele54g1304 464 FunFam UBX domain-containing protein 6 349 440 - -
Lele54g1304 464 CDD PUB 166 262 - -
Lele54g1304 464 SUPERFAMILY PUG domain-like 177 258 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1304 Lele-ChrLele54 18197436 18200570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1304 1 387 C2H2 Transcription Factor Family AT2G01650 54.660 2.84e-143 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele54g1304 PUB 5.1e-18 No_clan