Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1303 ATGGAGAGGGATTTCTTGGGTCTAAGCTCAAAAGAAACATTAACTATGGTGAAGGAGGAGATTAACAATGATGGATGCAAAGACTCAGGCTTCACTAGGGGTTCAGTTGTACAATGGCCCTTCTCGAACAAAGTCTCTGCTCTCCCACATTTGATGTCTTTTAAGGTTTCTCAAGATGACAAGACCAGGAAGATGGGGTCTGATCCCCTCATATCTGCTGCTGAAATACAGAAACCTTTCGATCACGATGTGCAAAGTGGTTTTCATTTTTCCCTGACCCCGTATCCTGTACCAAATGATGTGGATTCACCGAATGGTCCTCAAGATGTGAAGATGTTTTCGGCTCCCAATCAAGCAATTTCTGTCTCCATGGGACACCCTTTCTTGAATAACCATTTCACTACCGTGGGTCACAATATGGCTGGCAATGATGTGAAGCAACAGTTGCTTGGGGGTATACCTGTTAATTTGCCTCATTTAGTACCCTCCACCATCGGTTCCGTTGCCGCGATGACTGAATCATGTCTGAAGCCACCCGCACCTCCCAGTCAACTCACCATTTTCTATGCCGGGACTGTGAATGTTTTTGAAGATATCTCTCCTGAGAAGGCACAAGCTATCATGCTGTGGGCTGCGAATGGGTTACCTTTGACTTCTAACAAGGCACAGCCGAACGTTCAGGCACCGAACTCAAAGTTGACTTCAGGTGAAGGTGTGCCCGTGAGTCAACCCATAAGCACATCGCCTTGCGCTGGTCTTTCCAGTCCGCTATCTGTGTCTTCGCATACGGGTGCACAGTCAAGGAGTGGCTCAACTAGCACTGATGAGCTTCTGGCAGCTAAAACAACTGGAGTTCCCACAACTCCTGTTAGCAAAGTGGAGCCTCCAAAAGTAGTTAAGGCAACTGCTATGTTGCCTTCTGCCGTGCCGCAGGCTCGCAAAGCATCATTGGCACGATTTCTGGAGAAACGCAAAGAAAGGGTGATGAGTGCCGCAGCACCATACAACCTAAGCAAGAAATCCAAGGATGTTGCTAATTTCTCTGCAACTACTTCGGTTGGTTCTAGTATTCTATCAGCCAAGCAAGCATAG 1092 0.4734 MERDFLGLSSKETLTMVKEEINNDGCKDSGFTRGSVVQWPFSNKVSALPHLMSFKVSQDDKTRKMGSDPLISAAEIQKPFDHDVQSGFHFSLTPYPVPNDVDSPNGPQDVKMFSAPNQAISVSMGHPFLNNHFTTVGHNMAGNDVKQQLLGGIPVNLPHLVPSTIGSVAAMTESCLKPPAPPSQLTIFYAGTVNVFEDISPEKAQAIMLWAANGLPLTSNKAQPNVQAPNSKLTSGEGVPVSQPISTSPCAGLSSPLSVSSHTGAQSRSGSTSTDELLAAKTTGVPTTPVSKVEPPKVVKATAMLPSAVPQARKASLARFLEKRKERVMSAAAPYNLSKKSKDVANFSATTSVGSSILSAKQA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1303 363 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 119 342 IPR040390 -
Lele54g1303 363 SMART tify_2 178 213 IPR010399 -
Lele54g1303 363 Pfam Jas motif 310 335 IPR018467 -
Lele54g1303 363 ProSiteProfiles Tify domain profile. 178 213 IPR010399 -
Lele54g1303 363 MobiDBLite consensus disorder prediction 222 276 - -
Lele54g1303 363 Pfam tify domain 180 212 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1303 Lele-ChrLele54 18185870 18188555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1303 37 341 Tify Gene Family AT3G17860 37.231 6.20e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele54g1303 tify 8.4e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1303 54 18185870 18188555 Lele55g0150 55 959501 962201 hybridization
Lele54g1303 54 18185870 18188555 Lele56g0148 56 1368371 1371055 hybridization