Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1287 ATGACAAAATGCTATGACTCAAGTGAGCAGCTAAAACCCACCACCACCCCTATCTGGTTTTTCCAGAGACCCTGCGAAAGGCAGAGAGCCCCCTTCGACAGTGAAGCCTTTTCTGCAGCTTTAATAATCATATATTGCCTTTACTTCGTTATCTTTCTCCTAGTGTCCTCCTTATCGGCTGACATGTTTGCCTCAACGATCCCAACACTGTCTAAACTGACACCTTCGCATTTCGTGTTACTCCCACCAAACGCCTACTTAGAAATCTTCCCACCTGGAAGAAGAATATACCGGAGAAGCAGAGTGTCAGCTTATTCTAAATCAGCTCATCACAGTTGCCGTCTTTACCCGAAATCGAACACTAGACCTATAGTGGCCACGAGGGCCAGTAATGGCGATGATGGCGCGTTTGATGCTGCCCCACAACAGTCTTCCCCTCCTCCTCCTGACATGGAAGAAGTGAAGAGTACCTCTTCCGGCCTCGGTGATGGTTATGTGGCCTTGTTTGTTCGAATGTTAGGCTTAGATCATGATCCTCTTGATAGAGAACAGGCTATAATTGCTCTGTGGAAATATTCACTTGGTGGAAAGCAGTGTGTTGATACTTTAATGCGATTTCCTGGCTGTATTAATCTTACTGTGAACCTCCTCAGATCAGATTCTAGTTCATCATGTGAAGCAGCTGCAGGCCTTTTGCGATCTCTATCCTCAGTCAATCTATACAGGAATTTGGTAGCAGAGAGTGGAGCAATAGAAGAGATAAATAGACTGCTGAGGCAGTCTTCCTTGGCTCCTGAGGTAAAGGAGCAGAGTTTGATTACATTGTGGAATTTATCTGTGGATGAGAAGCTCAGCATTAAACTTGCAAAGAGTGATATCCTGCCATTGATTATCAAGTACCTTGAAGACGAGGATGTAAAAGTGAAGGAAGCTGCGGGAGGCATATTGGCAAATTTAGCTTTGAGCCATGTTAACCACAGCATTTTGGTTGAAGCAGGTGTTATACCAAAATTGGCAAATTTCTTAACTTCTGATCCTGAAGGGTCCAAAGTCATTAAAAAGGAAGCAAAAAATGCGTTGCTGGAATTTGTTAAGGATGAATATTATAAAATTCTTGTCGTTGAGGAAGGTCTGGTTCCTGTGCCACTGATTGGTGCTGAGGCATACAAGTCATTCTCCCCTGGTCTGCATTCATGGCCCAAATTACCAGATGGTACAGAGATTGAACGGGCTTCTCTAAAACCTTCCAGGTATGGTGCATCAGAATTACTTCTTGGACTTAATATTGATGATAAGAGTGCTAACATAGAGGAAGCAAAATTGAATGCGATTGTGGGACGGACACAACAACAATTCCTTGCTCGTATTGGGGCTATAGAATGGGAAGGAAAAAGTGCATCTGATTCTGAAAGCTCTGATAGGCAACAAGTTACGCTTTTACCTTGGTTGGATGGTGTTGCTCGCTTGGTACTTATTCTAGAACTAGAAGATAAGGCCGCCATAAAAGGGGCTGCAGAGTCAATAGCTGACGTATCTATCAATGAACATATGCGCATTGCATTCAAGGAGGCTGGAGCTGTTAAGCATTTAGTTCGGCTTTTGAATTGTGCTGACGATGCTGTCAGATTGGCTGTAACTCAAGCTCTGGAGAGGTTGTCTGCCAGCAATGGAGTCTGCCAGAAGATTGAATCTGAGGGAGCATTAAGTCCTTTAATTAATATTCTAAAATGCTCAGAGATTTCTGAAACTATTGCAGAAAAGTCTTTGAATACAATTGCTCGCATACTAGACCCCAGTAAAGAGATGAAATTGGAGTTTTATGATGGACCAGTTAATGGATCTAAGAAGGCTTTTAGTGGAGTTAGAAATGATGCTTCTTCAGCTAGCTTTAGTACCACTGAATATCCGATATCAAAGACCACTACCAGGAATGATGTCTTGGATTCTGCTTTTGTAGCCCGCCTTGTTGAGATTCTGAAGTCATCTTCTCCCAGTTTACAAGCAAAAGCGGCATCAGTTCTTGAGTTCGTTTCATTGACTGACCCAACTATGGTCTCTAGTATATCTGTAGATATCGAATCTGCTCTGGATGCTGTCTTTCAGCAAAAGATTTTGAGAATGTCAGGTGGAGAACCTGATGTTGAAGATCAGGTTTCAGAAGCATACCCGATTGAAGTTGAAGAAGCTGGGCTTGCCATATCAGCAGCATCCTGGTTAATGACAAGACTACTCGACTCTCAGCATTTTCGCGAAAAAGTAAATTCCTTGCATTTCGTCGGCTTGCTTCGAAAAATCCTAAAGTCTTGTATTCCTCTCCACAGCAAAGACTGGGTGGCTGCTTGCCTCGTTAAACTCAGCTCTCTCTCAAGTGACAACCCAAATCTTGATCCAATCCATGAGGATGTTACACTTTATGAGACAATCCCAAGACTCATAGAACAGATAAAAACTTCGTTCTCTCTGGAATCACAGGAATCTGCTGTTGTAGAACTGAACAGAATAATATCTGAAGAAGTGGAGAATTCTGCTAGAGCCATTGTAGCTGAGGGGGCAATAGACCCATTGGTGAGGCTGATAGAAGAAGGAAGTGAAAGGGCGGTTGAAGCAGGATTGGCTATATTGTATAATCTGAGCATGGACCCTGAGAACCATTCAATGATTGTGGCTGCTGGTGCAGTTCCTGTATTGAGAAGGATTGTGCTCTCACAAAGGCCACAATGGGAAAAGGCACTTCATTTACTCAGGAATTTGCCTACTTGA 2760 0.4312 MTKCYDSSEQLKPTTTPIWFFQRPCERQRAPFDSEAFSAALIIIYCLYFVIFLLVSSLSADMFASTIPTLSKLTPSHFVLLPPNAYLEIFPPGRRIYRRSRVSAYSKSAHHSCRLYPKSNTRPIVATRASNGDDGAFDAAPQQSSPPPPDMEEVKSTSSGLGDGYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKQCVDTLMRFPGCINLTVNLLRSDSSSSCEAAAGLLRSLSSVNLYRNLVAESGAIEEINRLLRQSSLAPEVKEQSLITLWNLSVDEKLSIKLAKSDILPLIIKYLEDEDVKVKEAAGGILANLALSHVNHSILVEAGVIPKLANFLTSDPEGSKVIKKEAKNALLEFVKDEYYKILVVEEGLVPVPLIGAEAYKSFSPGLHSWPKLPDGTEIERASLKPSRYGASELLLGLNIDDKSANIEEAKLNAIVGRTQQQFLARIGAIEWEGKSASDSESSDRQQVTLLPWLDGVARLVLILELEDKAAIKGAAESIADVSINEHMRIAFKEAGAVKHLVRLLNCADDAVRLAVTQALERLSASNGVCQKIESEGALSPLINILKCSEISETIAEKSLNTIARILDPSKEMKLEFYDGPVNGSKKAFSGVRNDASSASFSTTEYPISKTTTRNDVLDSAFVARLVEILKSSSPSLQAKAASVLEFVSLTDPTMVSSISVDIESALDAVFQQKILRMSGGEPDVEDQVSEAYPIEVEEAGLAISAASWLMTRLLDSQHFREKVNSLHFVGLLRKILKSCIPLHSKDWVAACLVKLSSLSSDNPNLDPIHEDVTLYETIPRLIEQIKTSFSLESQESAVVELNRIISEEVENSARAIVAEGAIDPLVRLIEEGSERAVEAGLAILYNLSMDPENHSMIVAAGAVPVLRRIVLSQRPQWEKALHLLRNLPT 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1287 919 SUPERFAMILY ARM repeat 488 906 IPR016024 -
Lele54g1287 919 Pfam Armadillo/beta-catenin-like repeat 514 554 IPR000225 GO:0005515
Lele54g1287 919 Gene3D - 727 918 IPR011989 -
Lele54g1287 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Lele54g1287 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 249 282 IPR000225 GO:0005515
Lele54g1287 919 SUPERFAMILY ARM repeat 163 597 IPR016024 -
Lele54g1287 919 MobiDBLite consensus disorder prediction 131 158 - -
Lele54g1287 919 Gene3D - 158 386 IPR011989 -
Lele54g1287 919 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 105 919 - -
Lele54g1287 919 Gene3D - 469 691 IPR011989 -
Lele54g1287 919 SMART arm_5 322 365 IPR000225 GO:0005515
Lele54g1287 919 SMART arm_5 196 237 IPR000225 GO:0005515
Lele54g1287 919 SMART arm_5 281 321 IPR000225 GO:0005515
Lele54g1287 919 SMART arm_5 514 554 IPR000225 GO:0005515
Lele54g1287 919 SMART arm_5 880 919 IPR000225 GO:0005515
Lele54g1287 919 SMART arm_5 238 280 IPR000225 GO:0005515
Lele54g1287 919 SMART arm_5 639 679 IPR000225 GO:0005515
Lele54g1287 919 SMART arm_5 555 597 IPR000225 GO:0005515
Lele54g1287 919 SMART arm_5 838 879 IPR000225 GO:0005515
Lele54g1287 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 850 892 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1287 Lele-ChrLele54 18087348 18093313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1287 817 919 U-box Gene Family AT2G23140 35.922 9.79e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1287 54 18087348 18093313 Lele55g0168 55 1062945 1068313 hybridization