Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1269 ATGGGAGATGAAGGAGCAAGTACAACAACAAGTAGGGGGTTGCATGGGCAATCTCAGCAAAGCTCGAGGTGGAGTCCGACGCCAGCACAGTTACTGAAGCTTGAAGAACTGTACAGACAAGGGACGAAAACGCCGACGGCTGAACAAATACAGCAAATAGCTTCACAGCTACGTCGTTTTGGGAAGATCGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAAGCGAGAGAACGCCAGAAACGACGTCGCCGGGAGATGGAGCAAGCTGCTTCTGATTCCGCTCAAGACAAACAACTGTACGTTGTTAATGTGAGAAGCTCAGAGGAAAAGCAAGACCCTGCAGGGCTGACAGGTACGGGTTATCAAGTTAAAGAGACAAAGAAGTTCGCATCTTCTCCAAACTGTAGTGCCCTTCAACAGGAAATAGCAGAGAAAAGAACACAAGTTTTGAAGAAACCAGAGCAAACAACACCACTCTCACAAAAGTTTACCTCTCAAAATCATAATTTACCATTTATACTCAACAGAGAAAATTATTGCACCTATTGTGATGAAGAAGAATATTCAAACACAAGAACCCTTGAGCTTTTTCCTCTTAAGAGGGGTGACCAACATGGCATGTCTCTCAATGACAGCAAATCTAGGTTTTATGCATCAACTTCTCTGGGCACTGAAATTGCCACCTCATGCCAGTTTTTTGAGTTCCTTCCTCTGAAAGACTGA 729 0.4444 MGDEGASTTTSRGLHGQSQQSSRWSPTPAQLLKLEELYRQGTKTPTAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRREMEQAASDSAQDKQLYVVNVRSSEEKQDPAGLTGTGYQVKETKKFASSPNCSALQQEIAEKRTQVLKKPEQTTPLSQKFTSQNHNLPFILNRENYCTYCDEEEYSNTRTLELFPLKRGDQHGMSLNDSKSRFYASTSLGTEIATSCQFFEFLPLKD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1269 242 Pfam Homeodomain 21 81 IPR001356 GO:0003677
Lele54g1269 242 Gene3D - 14 82 - -
Lele54g1269 242 ProSiteProfiles 'Homeobox' domain profile. 17 82 IPR001356 GO:0003677
Lele54g1269 242 MobiDBLite consensus disorder prediction 1 28 - -
Lele54g1269 242 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 237 IPR044555 GO:0003700|GO:0099402
Lele54g1269 242 CDD homeodomain 23 77 IPR001356 GO:0003677
Lele54g1269 242 MobiDBLite consensus disorder prediction 77 96 - -
Lele54g1269 242 SMART HOX_1 19 86 IPR001356 GO:0003677
Lele54g1269 242 SUPERFAMILY Homeodomain-like 15 85 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1269 Lele-ChrLele54 17996348 17998559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1269 15 137 Wox Gene Family AT3G18010 55.285 8.13e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele54g1269 Homeodomain 4.5e-19 CL0123