Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1257 ATGGATTTTCTGGCAAATCCATGTCCTTTGCCTCTCTCTGTGCTGTTTTCGTTCCAGAATTTCGTTGAAAGGGCAAAACAGATTAGCAGTCTCGCGATTTCTGCCATCGTGGGGAACATCTTCTCTGCGATCTTGACCTTTTTCTTTGCATTAGGTTCGAATTCGACTCACCTCTTTCTTTTGATAGCATTCTTGGGTGTGTTTGAGGCAGAAATCCACTTTCAGCGAAAAGTGAAACCCGTGGGAACGTTGTTGGGAGCTATGACTGGAGCGTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTAGAGGAGCTGCTGTAGGAGCCATATCAGGAGCTGTGTTTTCCCTTGAAGTGGTTGAATCTTCTCTTGCTCTGTGGCAAACCGACGAATCTGGGATTGGGTGTCTCTTGTACTTGATTGACGTTATTACTAGCCTACTGAGTGGGAGACTTGTCCGTGAGAGGATTGGTCCAGCCATGCTAAGTGCTGTCCAAAGCCAGATGGGTGCTGTTGAAGCCAGCTTTGATGAGATTCAAAACCTCTTTGACACTGGAAGTGCCAAAGGTTTATCAGGAGATTTAGTTGAAAAAATTCCAATAATAACAATCACAGGTGACGACAGTGTTGATGCTTGTGGTGAAAGAGTTTCCTGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACAGTTAGAAAATTGCCTCATTGTCATCACATGTTTCACCTAACTTGTATAGATAAGTGGCTCTTCAGGCATGGTTCTTGCCCATTATGCAGAAGAGATCTGTAA 795 0.4491 MDFLANPCPLPLSVLFSFQNFVERAKQISSLAISAIVGNIFSAILTFFFALGSNSTHLFLLIAFLGVFEAEIHFQRKVKPVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSLEVVESSLALWQTDESGIGCLLYLIDVITSLLSGRLVRERIGPAMLSAVQSQMGAVEASFDEIQNLFDTGSAKGLSGDLVEKIPIITITGDDSVDACGERVSCSVCLQDFQLGETVRKLPHCHHMFHLTCIDKWLFRHGSCPLCRRDL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1257 264 SMART ring_2 219 260 IPR001841 -
Lele54g1257 264 SUPERFAMILY RING/U-box 218 264 - -
Lele54g1257 264 FunFam NEP1-interacting protein-like 1 179 264 - -
Lele54g1257 264 ProSiteProfiles Zinc finger RING-type profile. 219 261 IPR001841 -
Lele54g1257 264 CDD RING-H2_PA-TM-RING 219 261 - -
Lele54g1257 264 Pfam Ring finger domain 218 261 IPR001841 -
Lele54g1257 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 264 IPR013083 -
Lele54g1257 264 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 22 263 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1257 Lele-ChrLele54 17919882 17922306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1257 11 264 C3H Transcription Factor Family AT5G66070 64.173 2.11e-106 305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0055 52 356008 363558 Lele54g1257 54 17919882 17922306 CCT
Lele49g0049 49 319049 325208 Lele54g1257 54 17919882 17922306 CCT
Lele50g0057 50 389962 396192 Lele54g1257 54 17919882 17922306 CCT
Lele51g0055 51 324178 330356 Lele54g1257 54 17919882 17922306 CCT