Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1253 ATGATTGATTCCCTTGACACGGCTTCCGGGCTTCGGACGAAGATGAAACCTGAGGGCTTGCCACGTGTCATTTGTTCTGTTTTGATTCTAAGGTGGCAAGTAGGCCTGGTTTCGCTCGTGTTCGATTTTGTTGGTCTTGTCTCAGACAAGATCAATCATCATAAGCAGGCAATTTCAAGTGAATCAGAAGAAGCGCCGAGGTTGCTCGCAGTTGATTGGTGCTGTGTGTGTTTGTCAAGGTTAAAGGAGAAAGACGAGACGAAGGTTCTTCCTTGCTTTCACAGATTCCATAAACTGTGTGTAGATAAATGGCTCAATAAGGGTTGCCACAAAACATGTCCTGTGTGTCGTTTCTCAATGGTAGCAGAGGATCAGAATAAGTCTCTTGCTTCTGCGCAATTCACTGAGGATATGGTAATATGCTTGATCCTGTTCATATGGAATTTATTTCGCCACCTAACTTGTGCTATTGGTGACCCAGATTCAATTCTTTGGGCTTGA 501 0.4411 MIDSLDTASGLRTKMKPEGLPRVICSVLILRWQVGLVSLVFDFVGLVSDKINHHKQAISSESEEAPRLLAVDWCCVCLSRLKEKDETKVLPCFHRFHKLCVDKWLNKGCHKTCPVCRFSMVAEDQNKSLASAQFTEDMVICLILFIWNLFRHLTCAIGDPDSILWA 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1253 166 SUPERFAMILY RING/U-box 73 123 - -
Lele54g1253 166 SMART ring_2 74 116 IPR001841 -
Lele54g1253 166 PANTHER TARGET OF ERK KINASE MPK-1 59 123 - -
Lele54g1253 166 Pfam Ring finger domain 73 117 IPR001841 -
Lele54g1253 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 134 IPR013083 -
Lele54g1253 166 ProSiteProfiles Zinc finger RING-type profile. 74 117 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1253 Lele-ChrLele54 17899578 17902420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1253 74 124 C3H Transcription Factor Family AT5G45290 45.098 5.45e-12 61.2