Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1252 ATGGAGGCTGATATTGATACAGTAAATTCATCATCATTATCTTACTACAGCATTCTCGGTGTCGATTCGGATTCTTCTCTTGAAGAAATAAGGCGCGCTTATCGCAAGCTTGCCATGCAATGGCATCCGGATAGGTGGACAAGAACACCTTCTCTACTGGGCGAAGCAAAACGAAAGTTCCAGCAAATTCAGGAAGCCTATTCAGTATTATCGGACAAAAGCAAAAGAACAATGTACGATGCAGGCTTGTACGATCCCATAGAAGAAGAGGATGAGGGATTTTATGACTTCGTGGAAGAGCTGAAGACGCAAGTGAGCAGAGAGGAGAAGGAATATAGTATAGAGGAGTTGCAGAGCATGCTCATGGAAATGGTTCAAGAATTCGAGAATCCTTCATGGCAATTCGGAGCCTCGGCGGTGGGTGAGGAAAGCCAGTGCTCAGAGAGGCCCGGTCTGGACTCAAACCTGAAGATGAATTTAGGGTCACCTTTTCACGAGCCAGGGCTTCATTTGAACGGAATGAGTGGTTACTGTAGTTAG 540 0.4574 MEADIDTVNSSSLSYYSILGVDSDSSLEEIRRAYRKLAMQWHPDRWTRTPSLLGEAKRKFQQIQEAYSVLSDKSKRTMYDAGLYDPIEEEDEGFYDFVEELKTQVSREEKEYSIEELQSMLMEMVQEFENPSWQFGASAVGEESQCSERPGLDSNLKMNLGSPFHEPGLHLNGMSGYCS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1252 179 CDD DnaJ 20 72 IPR001623 -
Lele54g1252 179 SMART dnaj_3 13 75 IPR001623 -
Lele54g1252 179 SUPERFAMILY Chaperone J-domain 11 86 IPR036869 -
Lele54g1252 179 Pfam DnaJ domain 15 80 IPR001623 -
Lele54g1252 179 Gene3D DnaJ domain 3 111 IPR036869 -
Lele54g1252 179 ProSiteProfiles dnaJ domain profile. 14 83 IPR001623 -
Lele54g1252 179 Coils Coil 98 127 - -
Lele54g1252 179 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Lele54g1252 179 PANTHER PUTATIVE, EXPRESSED-RELATED 11 134 - -
Lele54g1252 179 PRINTS DnaJ domain signature 55 75 IPR001623 -
Lele54g1252 179 PRINTS DnaJ domain signature 34 49 IPR001623 -
Lele54g1252 179 PRINTS DnaJ domain signature 16 34 IPR001623 -
Lele54g1252 179 PRINTS DnaJ domain signature 75 94 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1252 Lele-ChrLele54 17897785 17899253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1252 10 81 C2H2 Transcription Factor Family AT1G74250 42.466 1.77e-12 62.8