Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1247 ATGGCGGTTTCACCTAGAAGCACTTCCAGCTTGGAATTGACCATATCTGTCCCTGGCTTTGCTTCTTCTCCTTCTCTTCCTTCGTCTGCAGTGAGAGAGTTAGACATAAACCAAGTACCGTCATCAGAAGAGGAATGGATAACAATGGAAGAAGAAGAAGAAAGCGGTAATGGAGGAGGTCCTCCTCGTAAGAAACTCCGTCTTACCAAGGAACAGTCTCGTCTCCTCGAAGACAGCTTCAGACAAAACCACACTCTCAACCCAAAGCAGAAGGAATCATTGGCAAAGCAGTTGAATCTGCGAGCCAGGCAGGTGGAAGTGTGGTTTCAGAACCGTAGGGCAAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTCAAGAGATGGTTCGGATCGCTGACAGAGCAGAACAGAAAGCTGCACAAGGAAGTCGTAGAGCTCAGGGCTATGAAGGTGGGTCCCCCCACCGTGATATCGCCCCACAGTTGCCACCCACTTCCGGCGTCAACCCTAACCATGTGTCCTCGCTGCGAGAAGGTCACGACCACCACTGCAGCCGCCGCCGTGGGCCCCACCATGTCCTACCGACATTCTCATTCGCCTCCCGCCCCTTCTTCTTCCCTTCTATGA 636 0.5299 MAVSPRSTSSLELTISVPGFASSPSLPSSAVRELDINQVPSSEEEWITMEEEEESGNGGGPPRKKLRLTKEQSRLLEDSFRQNHTLNPKQKESLAKQLNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRKLHKEVVELRAMKVGPPTVISPHSCHPLPASTLTMCPRCEKVTTTTAAAAVGPTMSYRHSHSPPAPSSSLL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1247 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 29 203 - -
Lele54g1247 211 MobiDBLite consensus disorder prediction 1 27 - -
Lele54g1247 211 CDD homeodomain 62 120 IPR001356 GO:0003677
Lele54g1247 211 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Lele54g1247 211 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
Lele54g1247 211 FunFam Homeobox-leucine zipper protein 18 47 124 - -
Lele54g1247 211 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Lele54g1247 211 Gene3D - 56 125 - -
Lele54g1247 211 Pfam Homeodomain 63 117 IPR001356 GO:0003677
Lele54g1247 211 MobiDBLite consensus disorder prediction 43 65 - -
Lele54g1247 211 SMART halz 119 162 IPR003106 GO:0006355|GO:0043565
Lele54g1247 211 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Lele54g1247 211 SMART HOX_1 61 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1247 Lele-ChrLele54 17871702 17873912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1247 31 183 Homeobox Transcription Factor Family AT1G70920 63.291 2.72e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele54g1247 Homeodomain 4.4e-17 CL0123