Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1222 ATGGTAGGTGACGAAGTGAACATCAACATTCGTTGCTCCAATGGCTCTAAATTTTTGGTTCAGATTAGTCTTGACTCCACCATCAAATCATTCAAGGAAGCTATCGCTCAAAAGTGCGATATCTCATCCGATCAACAGCGGCTGATTCATAAGGGTCGGATCTTGAAGGACGATCAAACCCTGCAAAGCTACGACAGATTATCATATTATCAATATGCACTTGGCATGTCCAAGAAAATGATCCCTGGTCATGCTTCATTAGGGTCGTGGACGAATGCTTATGGTCTTTAA 291 0.4227 MVGDEVNINIRCSNGSKFLVQISLDSTIKSFKEAIAQKCDISSDQQRLIHKGRILKDDQTLQSYDRLSYYQYALGMSKKMIPGHASLGSWTNAYGL 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1222 96 SUPERFAMILY Ubiquitin-like 3 68 IPR029071 -
Lele54g1222 96 SMART ubq_7 6 74 IPR000626 GO:0005515
Lele54g1222 96 Pfam Ubiquitin family 8 65 IPR000626 GO:0005515
Lele54g1222 96 ProSiteProfiles Ubiquitin domain profile. 6 65 IPR000626 GO:0005515
Lele54g1222 96 Gene3D - 3 84 - -
Lele54g1222 96 PANTHER UBIQUILIN 6 65 IPR015496 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1222 Lele-ChrLele54 17727771 17728237 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0037 52 245607 246899 Lele54g1222 54 17727771 17728237 CCT
Lele49g0029 49 200040 202694 Lele54g1222 54 17727771 17728237 CCT
Lele50g0034 50 245776 249798 Lele54g1222 54 17727771 17728237 CCT
Lele51g0031 51 214202 217297 Lele54g1222 54 17727771 17728237 CCT
Lele54g1222 54 17727771 17728237 Lele54g1222 54 17727771 17728237 ECH
Lele54g1222 54 17727771 17728237 Lele56g0225 56 1819773 1823218 hybridization